Pairwise Orthologs for MONDO01774

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Gene MONDO01774 (F6Y6W8)

E Monodelphis domestica | Toll-like receptor 4 [TLR4]

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Evidence			Domains	Taxon	Protein ID	Relation type	Cross reference	Domain Architectures
Pair	HOG	OMA	Domains	Taxon	Protein ID	Relation type	Cross reference	Domain Architectures
			E	Entamoeba invadens IP1	ENTIV08367		A0A0A1TZE2
			E	Lepisosteus oculatus	LEPOC08508		W5M7V9
			E	Esox lucius	ESOLU13340		A0A3P9A9D9
			E	Pygocentrus nattereri	PYGNA03054		A0A3B4EHT7
			E	Ictalurus punctatus	ICTPU27038		ENSIPUG00000005336.1
			E	Ornithorhynchus anatinus	ORNAN20733		F7A0Y2
			E	Tachyglossus aculeatus	TACAU05511		XP_038601035
			E	Loxodonta africana	LOXAF17171		G3SYU3
			E	Echinops telfairi	ECHTE06150		ENSETEG00000003270
			E	Oryctolagus cuniculus	RABIT14029		G1SH24
			E	Ochotona princeps	OCHPR09344		ENSOPRG00000011541
			E	Dipodomys ordii	DIPOR15129		ENSDORG00000001288.2
			E	Fukomys damarensis	FUKDA03839		A0A091D6V2
			E	Heterocephalus glaber	HETGA08952		G5C405
			E	Cavia porcellus	CAVPO01746		H0VSQ0
			E	Chinchilla lanigera	CHILA06519		A0A8C2VMD2
			E	Octodon degus	OCTDE19891		A0A6P3F947
			E	Cricetulus griseus	CRIGR18792		TLR4_CRIGR
			E	Mus musculus	MOUSE40157		TLR4_MOUSE
			E	Rattus norvegicus	RATNO33665		A6J802
			E	Nannospalax galili	NANGA02165		A0A8C6RHB5
			E	Ictidomys tridecemlineatus	ICTTR18038		ENSSTOG00000021892
			E	Cercocebus atys	CERAT22793		A0A2K5NW82
			E	Chlorocebus sabaeus	CHLSB03092		A0A0D9RL22
			E	Macaca fascicularis	MACFA11377		A0A2K5X142

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