Pairwise Orthologs for MANJA50807

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Gene MANJA50807 (XP_036858306)

E Manis javanica

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Evidence			Domains	Taxon	Protein ID	Relation type	Cross reference	Domain Architectures
Pair	HOG	OMA	Domains	Taxon	Protein ID	Relation type	Cross reference	Domain Architectures
			E	Ornithorhynchus anatinus	ORNAN27922		A0A6I8P5F9
			E	Tachyglossus aculeatus	TACAU30392		XP_038627689
			E	Drosophila miranda	DROMI03708		XP_017137822
			E	Eptatretus burgeri	EPTBU24814		A0A8C4QM43
			E	Scyliorhinus torazame	SCYTO19090		A0A401PY83
			E	Callorhinchus milii	CALMI11206		A0A4W3KIT9
			E	Gasterosteus aculeatus	GASAC04365		G3PBK2
			E	Electrophorus electricus	ELEEL27642		A0A4W4E1C5
			E	Latimeria chalumnae	LATCH12983		H3AY28
			E	Procavia capensis	PROCA01726		ENSPCAG00000012425
			E	Loxodonta africana	LOXAF03955		G3UMF3
			E	Echinops telfairi	ECHTE08457		ENSETEG00000015246
			E	Oryctolagus cuniculus	RABIT13543		ENSOCUG00000003505.2
			E	Cavia porcellus	CAVPO24140		H0V4G5
			E	Octodon degus	OCTDE22836		ENSODEG00000002601.1
			E	Jaculus jaculus	JACJA12601		A0A8C5KJY4
			E	Mus musculus	MOUSE66377		ZXDB_MOUSE
			E	Ictidomys tridecemlineatus	ICTTR13376		ENSSTOG00000021364
			E	Cercocebus atys	CERAT45132		A0A2K5L970
			E	Macaca fascicularis	MACFA44429		ENSMFAG00000004528.1
			E	Macaca nemestrina	MACNE45364		A0A2K6C1W1
			E	Mandrillus leucophaeus	MANLE39969		A0A2K5XRH1
			E	Colobus angolensis palliatus	COLAP40010		A0A2K5KBP7
			E	Nomascus leucogenys	NOMLE38569		G1S2W3
			E	Aotus nancymaae	AOTNA41769		A0A2K5BU91

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