Pairwise Orthologs for LOXAF10248

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Gene LOXAF10248 (G3SZD4)

E Loxodonta africana | Glial fibrillary acidic protein [GFAP]

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Evidence			Domains	Taxon	Protein ID	Relation type	Cross reference	Domain Architectures
Pair	HOG	OMA	Domains	Taxon	Protein ID	Relation type	Cross reference	Domain Architectures
			A	Desulfurococcus mucosus (strain ATCC 35584 / DSM 2162 / JCM 9187 / O7/1)	DESM000133		WP_013561674
			A	Thermosphaera aggregans (strain DSM 11486 / M11TL)	THEAM00141		WP_245522061
			B	Protochlamydia amoebophila (strain UWE25)	PARUW02010		WP_011176560
			B	Synechococcus sp. (strain JA-3-3Ab)	SYNJA00442		CYA_0462
			B	Paenibacillus mucilaginosus (strain KNP414)	PAEMK06655		zapA
			B	Haliangium ochraceum (strain DSM 14365 / JCM 11303 / SMP-2)	HALO106491		Hoch_6705
			E	Meyerozyma guilliermondii (strain ATCC 6260 / CBS 566 / DSM 6381 / JCM 1539 / NBRC 10279 / NRRL Y-324)	PICGU00843		A5DC38
			E	Lepisosteus oculatus	LEPOC04739		W5N1M7
			E	Anabas testudineus	ANATE28216		ENSATEG00000022863.1
			E	Seriola dumerili	SERDU13280		A0A3B4VJT1
			E	Echeneis naucrates	ECHNA47782		A0A665TPE0
			E	Cynoglossus semilaevis	CYNSE11958		A0A3P8X3L8
			E	Scophthalmus maximus	SCOMX14477		A0A2U9CRS6
			E	Dicentrarchus labrax	DICLA47810		XP_051244737
			E	Gasterosteus aculeatus	GASAC08037		G3P5T5
			E	Sparus aurata	SPAAU02918		A0A671YBI9
			E	Mola mola	MOLML24952		A0A3Q3XGV5
			E	Takifugu rubripes	TAKRU40984		A0A674MDF6
			E	Tetraodon nigroviridis	TETNG10179		H3DBT7
			E	Oryzias javanicus	ORYJA49769		A0A437D566
			E	Oryzias latipes	ORYLA16387		ENSORLG00000002346
			E	Oryzias melastigma	ORYME18062		A0A3B3CLI2
			E	Nothobranchius furzeri	NOTFU08227		LOC107378535
			E	Kryptolebias marmoratus	KRYMA12718		A0A3Q3AA21
			E	Cyprinodon variegatus	CYPVA07258		A0A3Q2GHR6

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