Pairwise Orthologs for LATCH08449

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Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Gene LATCH08449 (H3AQ79)

E Latimeria chalumnae | PDZ domain-containing protein [SDCBP2]

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Evidence			Domains	Taxon	Protein ID	Relation type	Cross reference	Domain Architectures
Pair	HOG	OMA	Domains	Taxon	Protein ID	Relation type	Cross reference	Domain Architectures
			E	Eptatretus burgeri	EPTBU20652		A0A8C4Q0N4
			E	Scyliorhinus torazame	SCYTO13129		A0A401NTU8
			E	Sinocyclocheilus grahami	SINGR57622		A0A672QUD4
			E	Procavia capensis	PROCA07988		ENSPCAG00000015584
			E	Echinops telfairi	ECHTE13859		ENSETEG00000007449
			E	Oryctolagus cuniculus	RABIT10137		ENSOCUG00000013200.3
			E	Ochotona princeps	OCHPR11564		ENSOPRG00000003537
			E	Fukomys damarensis	FUKDA21172		ENSFDAG00000009876.1
			E	Heterocephalus glaber	HETGA26513		G5AV73
			E	Cavia aperea	CAVAP03429		ENSCAPG00000017194.1
			E	Cavia porcellus	CAVPO04689		H0WC85
			E	Octodon degus	OCTDE26175		ENSODEG00000000432.1
			E	Jaculus jaculus	JACJA19808		A0A8C5P470
			E	Cricetulus griseus	CRIGR06771		A0A8C2L9J0
			E	Mus musculus	MOUSE36068		SDCB2_MOUSE
			E	Rattus norvegicus	RATNO28292		A0A8I5ZLP2
			E	Nannospalax galili	NANGA25001		A0A8C6RJK0
			E	Ictidomys tridecemlineatus	ICTTR08255		ENSSTOG00000009872
			E	Cercocebus atys	CERAT03274		A0A2K5LID3
			E	Macaca fascicularis	MACFA01354		A0A2K5UX67
			E	Macaca mulatta	MACMU02189		A0A8J8YF06
			E	Mandrillus leucophaeus	MANLE18497		A0A2K5Y7F9
			E	Colobus angolensis palliatus	COLAP29920		A0A2K5IFK0
			E	Rhinopithecus roxellana	RHIRO25745		A0A2K6NXF6
			E	Gorilla gorilla gorilla	GORGO22374		G3QLG3

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