Pairwise Orthologs for JACJA15958

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Gene JACJA15958 (A0A8C5KAH2)

E Jaculus jaculus | THO complex 5 [Thoc5]

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Evidence			Domains	Taxon	Protein ID	Relation type	Cross reference	Domain Architectures
Pair	HOG	OMA	Domains	Taxon	Protein ID	Relation type	Cross reference	Domain Architectures
			E	Polysphondylium pallidum (strain ATCC 26659 / Pp 5 / PN500)	POLPP01121		D3B277
			E	Cavenderia fasciculata (strain SH3)	CAVFA11588		F4QBI8
			E	Tieghemostelium lacteum	TIELA09406		A0A152A2B0
			E	Thecamonas trahens ATCC 50062	THETB06617		A0A0L0DDK7
			E	Naegleria gruberi strain NEG-M	NAEGR10020		D2VQR7
			E	Anaeramoeba ignava	ANAIG06959		A0A9Q0LHA5
			E	Monosiga brevicollis	MONBE06479		A9UXD9
			E	Spizellomyces punctatus	SPIPN01568		SPPG_01635
			E	Spizellomyces punctatus (strain DAOM BR117)	SPIPD01158		A0A0L0HT00
			E	Gonapodya prolifera (strain JEL478)	GONPJ09009		A0A139ABA0
			E	Branchiostoma floridae	BRAFL26318		A0A9J7LYD4
			E	Scyliorhinus torazame	SCYTO06292		A0A401PHF9
			E	Chiloscyllium punctatum	CHIPU09740		A0A401SLU9
			E	Callorhinchus milii	CALMI29661		A0A4W3HKM4
			E	Lepisosteus oculatus	LEPOC08323		W5MPA3
			E	Anguilla anguilla	ANGAN36947		XP_035234349
			E	Anabas testudineus	ANATE12087		ENSATEG00000006342.1
			E	Seriola dumerili	SERDU06250		A0A3B4ULI4
			E	Echeneis naucrates	ECHNA21072		A0A665U316
			E	Cynoglossus semilaevis	CYNSE32652		A0A3P8W8X5
			E	Scophthalmus maximus	SCOMX32686		ENSSMAG00000011118.1
			E	Dicentrarchus labrax	DICLA28955		XP_051279059
			E	Gasterosteus aculeatus	GASAC14406		G3P525
			E	Sparus aurata	SPAAU14314		A0A671W2X4
			E	Mola mola	MOLML13281		A0A3Q3X5Y1

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