Pairwise Orthologs for JACJA14850

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Gene JACJA14850 (A0A8C5K0P6)

E Jaculus jaculus | Transcription factor Jun [Jun]

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Evidence			Domains	Taxon	Protein ID	Relation type	Cross reference	Domain Architectures
Pair	HOG	OMA	Domains	Taxon	Protein ID	Relation type	Cross reference	Domain Architectures
			E	Gloeophyllum trabeum	GLOTR04051		estExt_fgenesh1_kg.C
			E	Gloeophyllum trabeum (strain ATCC 11539 / FP-39264 / Madison 617)	GLOTA04355		S7RV34
			E	Branchiostoma floridae	BRAFL34896		C3YQP4
			E	Branchiostoma lanceolatum	BRALA00831		BL17656
			E	Petromyzon marinus	PETMA07416		S4RFU8
			E	Eptatretus burgeri	EPTBU00016		A0A8C4QA20
			E	Scyliorhinus torazame	SCYTO04354		A0A401NRG0
			E	Chiloscyllium punctatum	CHIPU01759		A0A401RZ53
			E	Lepisosteus oculatus	LEPOC01619		W5NMJ0
			E	Anguilla anguilla	ANGAN17631		XP_035272125
			E	Anabas testudineus	ANATE16874		ENSATEG00000018007.1
			E	Seriola dumerili	SERDU18620		A0A3B4T4C4
			E	Echeneis naucrates	ECHNA36075		A0A665URR8
			E	Cynoglossus semilaevis	CYNSE21062		A0A3P8VE12
			E	Scophthalmus maximus	SCOMX04636		ENSSMAG00000017536.1
			E	Dicentrarchus labrax	DICLA37769		A0A8P4GE80
			E	Gasterosteus aculeatus	GASAC12984		G3PNU7
			E	Sparus aurata	SPAAU68080		A0A671V7P2
			E	Mola mola	MOLML04018		A0A3Q3VPS3
			E	Takifugu rubripes	TAKRU26731		Q800B5
			E	Oryzias javanicus	ORYJA23339		ENSOJAG00000004730.1
			E	Oryzias latipes	ORYLA13447		ENSORLG00000014541
			E	Oryzias melastigma	ORYME15499		A0A3B3B768
			E	Nothobranchius furzeri	NOTFU30572		A0A1A8A604
			E	Kryptolebias marmoratus	KRYMA04400		A0A3Q3A4D9

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