Pairwise Orthologs for HUMAN98730

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Gene HUMAN98730 (SPTN1_HUMAN)

E Homo sapiens | Spectrin alpha chain, non-erythrocytic 1 [SPTAN1]

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This entry is not the isoform used for orthologs inferences, orthologs below are inferred using the entry isoform HUMAN98732.

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Evidence			Domains	Taxon	Protein ID	Relation type	Cross reference	Domain Architectures
Pair	HOG	OMA	Domains	Taxon	Protein ID	Relation type	Cross reference	Domain Architectures
			B	Deltaproteobacteria bacterium NP119	U08DE06474		CL920_33475
			E	Monosiga brevicollis	MONBE04992		A9V703
			E	Capsaspora owczarzaki (strain ATCC 30864)	CAPO300442		A0A0D2U0V3
			E	Branchiostoma floridae	BRAFL21432		A0A9J7LL94
			E	Eptatretus burgeri	EPTBU15627		A0A8C4WXB9
			E	Scyliorhinus torazame	SCYTO02891		A0A401PL46
			E	Chiloscyllium punctatum	CHIPU12925		A0A401SVW9
			E	Callorhinchus milii	CALMI26467		A0A4W3K2V5
			E	Lepisosteus oculatus	LEPOC08623		W5MFP4
			E	Anguilla anguilla	ANGAN36459		XP_035236242
			E	Anabas testudineus	ANATE30887		ENSATEG00000009938.1
			E	Seriola dumerili	SERDU17346		A0A3B4VBC9
			E	Echeneis naucrates	ECHNA51443		A0A665WIL6
			E	Cynoglossus semilaevis	CYNSE07438		A0A3P8US37
			E	Scophthalmus maximus	SCOMX09054		ENSSMAG00000009496.1
			E	Dicentrarchus labrax	DICLA21293		A0A8C4ER16
			E	Gasterosteus aculeatus	GASAC05166		G3Q393
			E	Sparus aurata	SPAAU34948		A0A671Y1K4
			E	Mola mola	MOLML26257		A0A3Q3W9R3
			E	Takifugu rubripes	TAKRU44458		A0A674N1R2
			E	Tetraodon nigroviridis	TETNG17693		H3CBU0
			E	Oryzias latipes	ORYLA02878		ENSORLG00000012823
			E	Nothobranchius furzeri	NOTFU03761		sptan1
			E	Kryptolebias marmoratus	KRYMA08266		A0A3Q3BBI1
			E	Gambusia affinis	GAMAF30319		ENSGAFG00000005324.1

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