Pairwise Orthologs for HUMAN94972

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Gene HUMAN94972 (PABP1_HUMAN)

E Homo sapiens | Polyadenylate-binding protein 1 [PABPC1]

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This entry is not the isoform used for orthologs inferences, orthologs below are inferred using the entry isoform HUMAN94958.

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Evidence			Domains	Taxon	Protein ID	Relation type	Cross reference	Domain Architectures
Pair	HOG	OMA	Domains	Taxon	Protein ID	Relation type	Cross reference	Domain Architectures
			E	Polysphondylium pallidum (strain ATCC 26659 / Pp 5 / PN500)	POLPP04715		D3AVQ3
			E	Tieghemostelium lacteum	TIELA09368		A0A152A2C5
			E	Bodo saltans	BODSA06135		A0A0S4JPT3
			E	Leishmania infantum	LEIIN01106		A0A6L0Y1C4
			E	Leishmania major strain Friedlin	LEIMA06386		E9AFP0
			E	Leishmania mexicana (strain MHOM/GT/2001/U1103)	LEIMU06712		E9B6U3
			E	Leishmania braziliensis	LEIBR01131		A4HN85
			E	Leptomonas pyrrhocoris	LEPPY01188		A0A0N0E0I9
			E	Leptomonas seymouri	LEPSE05086		A0A0N0P5A9
			E	Trypanosoma vivax (strain Y486)	TRYVY16792		ERJ75_001743900
			E	Trypanosoma rangeli	TRYRA04134		A0A422NK82
			E	Diacronema lutheri	DIALT01782		A0A8J5Y2J5
			E	Emiliania huxleyi CCMP1516	EMIHU18412		R1DHZ4
			E	Trichomonas vaginalis G3	TRIVA33709		A2FYE4
			E	Monosiga brevicollis	MONBE00624		A9UU80
			E	Salpingoeca rosetta (strain ATCC 50818 / BSB-021)	SALR500940		F2TXY3
			E	Capsaspora owczarzaki (strain ATCC 30864)	CAPO301483		A0A0D2WM38
			E	Pneumocystis murina (strain B123)	PNEMU03218		M7NIT8
			E	Schizosaccharomyces pombe (strain 972 / ATCC 24843)	SCHPO00620		PABP_SCHPO
			E	Protomyces lactucaedebilis	PROLT05520		A0A1Y2F0H5
			E	Saitoella complicata (strain BCRC 22490 / CBS 7301 / JCM 7358 / NBRC 10748 / NRRL Y-17804)	SAICN03181		A0A0E9NGG8
			E	Dactylellina haptotyla (strain CBS 200.50)	DACHA09810		S8BLV1
			E	Arthrobotrys oligospora (strain ATCC 24927 / CBS 115.81 / DSM 1491)	ARTOA10377		A0A7C8V906
			E	Aspergillus parasiticus	ASPPA11912		A0A5N6D644
			E	Aspergillus glaucus	ASPGL05535		CE80158_42252

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