Pairwise Orthologs for HUMAN93938

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Gene HUMAN93938 (CHCH7_HUMAN)

E Homo sapiens | Coiled-coil-helix-coiled-coil-helix domain-contain [CHCHD7]

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This entry is not the isoform used for orthologs inferences, orthologs below are inferred using the entry isoform HUMAN93935.

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Evidence			Domains	Taxon	Protein ID	Relation type	Cross reference	Domain Architectures
Pair	HOG	OMA	Domains	Taxon	Protein ID	Relation type	Cross reference	Domain Architectures
			E	Armillaria gallica	ARMGA04947		A0A2H3EDA8
			E	Branchiostoma floridae	BRAFL04945		A0A9J7MHX2
			E	Branchiostoma lanceolatum	BRALA21288		BL35436
			E	Scyliorhinus torazame	SCYTO04683		A0A401NWI7
			E	Chiloscyllium punctatum	CHIPU10027		A0A401SMQ1
			E	Callorhinchus milii	CALMI12137		K4FY98
			E	Lepisosteus oculatus	LEPOC17100		W5MDP3
			E	Anguilla anguilla	ANGAN17058		A0A0E9WYJ9
			E	Anabas testudineus	ANATE01735		A0A3Q1J1B5
			E	Seriola dumerili	SERDU30613		A0A3B4VM03
			E	Echeneis naucrates	ECHNA38496		A0A665W812
			E	Cynoglossus semilaevis	CYNSE21145		A0A3P8VKE1
			E	Scophthalmus maximus	SCOMX18710		A0A2U9CZ73
			E	Dicentrarchus labrax	DICLA18322		A0A8P4KML7
			E	Gasterosteus aculeatus	GASAC01609		G3N4B0
			E	Sparus aurata	SPAAU47298		A0A671X8F2
			E	Mola mola	MOLML00318		A0A3Q3WF46
			E	Takifugu rubripes	TAKRU00172		A0A3B5KRE9
			E	Oryzias javanicus	ORYJA26328		ENSOJAG00000023448.1
			E	Oryzias melastigma	ORYME32552		A0A3B3DDK8
			E	Nothobranchius furzeri	NOTFU13196		A0A1A7ZB95
			E	Kryptolebias marmoratus	KRYMA09051		A0A3Q2ZA54
			E	Cyprinodon variegatus	CYPVA30592		A0A3Q2E7R8
			E	Poecilia formosa	POEFO19468		A0A087XUF4
			E	Poecilia reticulata	POERE17143		A0A3P9NFH3

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