Pairwise Orthologs for HUMAN85878

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Gene HUMAN85878 (HACE1_HUMAN)

E Homo sapiens | E3 ubiquitin-protein ligase HACE1 [HACE1]

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This entry is not the isoform used for orthologs inferences, orthologs below are inferred using the entry isoform HUMAN85877.

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Evidence			Domains	Taxon	Protein ID	Relation type	Cross reference	Domain Architectures
Pair	HOG	OMA	Domains	Taxon	Protein ID	Relation type	Cross reference	Domain Architectures
			B	Candidatus Abyssubacteria bacterium SURF_5	UC13303083		C4520_07790
			B	Riemerella anatipestifer (strain RA-GD)	RIEAR00093		S5WLH7
			B	Paraburkholderia phymatum (strain DSM 17167 / CIP 108236 / LMG 21445 / STM815)	PARP804097		WP_012403471
			B	Paraburkholderia phytofirmans (strain DSM 17436 / LMG 22146 / PsJN)	PARPJ05149		WP_012427142
			E	Guillardia theta	GUITH13761		EKX44141
			E	Guillardia theta (strain CCMP2712)	GUITC11418		L1J6J3
			E	Naegleria fowleri	NAEFO04053		A0A6A5BW26
			E	Anaeramoeba ignava	ANAIG07108		A0A9Q0LGY1
			E	Cryphonectria parasitica	CRYPA04660		gw1.1.4787.1
			E	Eptatretus burgeri	EPTBU03356		A0A8C4WXY0
			E	Anabas testudineus	ANATE17232		ENSATEG00000004630.1
			E	Scophthalmus maximus	SCOMX04315		ENSSMAG00000008723.1
			E	Tetraodon nigroviridis	TETNG17048		H3C8D3
			E	Neolamprologus brichardi	NEOBR26222		A0A3Q4I9X5
			E	Hippocampus comes	HIPCM27310		A0A3Q2Y518
			E	Cyprinus carpio carpio	CYPCA34421		A0A8C1SUA6
			E	Sinocyclocheilus grahami	SINGR98662		A0A672M9J2
			E	Heterocephalus glaber	HETGA27047		ENSHGLG00100002577.1
			E	Nannospalax galili	NANGA26130		A0A8C6RY47
			E	Papio anubis	PAPAN33458		A0A8I5R628
			E	Callithrix jacchus	CALJA30395		A0A8I3W9Z3
			E	Panthera leo	PANLE15289		A0A8C8WAQ9
			E	Monodelphis domestica	MONDO12155		A0A5F8H4L0
			E	Phascolarctos cinereus	PHACI21678		ENSPCIG00000014252.1
			E	Anas platyrhynchos	ANAPL08716		ENSAPLG00000014263

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