Pairwise Orthologs for HUMAN84708

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Gene HUMAN84708 (TREM1_HUMAN)

E Homo sapiens | Triggering receptor expressed on myeloid cells 1 [TREM1]

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Evidence			Domains	Taxon	Protein ID	Relation type	Cross reference	Domain Architectures
Pair	HOG	OMA	Domains	Taxon	Protein ID	Relation type	Cross reference	Domain Architectures
			E	Loxodonta africana	LOXAF20984	1:1	G3T0U7
			E	Oryctolagus cuniculus	RABIT02415	1:1	G1T179
			E	Ochotona princeps	OCHPR08743	1:1	ENSOPRG00000006758
			E	Fukomys damarensis	FUKDA21806	1:1	A0A091DH61
			E	Cavia porcellus	CAVPO08909	1:1	A0A286XYD6
			E	Chinchilla lanigera	CHILA10262	1:1	A0A8C2VYQ4
			E	Jaculus jaculus	JACJA00604	1:1	A0A8C5K1Y6
			E	Mus musculus	MOUSE19730	1:1	TREM1_MOUSE
			E	Rattus norvegicus	RATNO43257	1:1	D4ABU7
			E	Nannospalax galili	NANGA19712	1:1	A0A8C6RLL9
			E	Ictidomys tridecemlineatus	ICTTR16395	1:1	ENSSTOG00000000051
			E	Cercocebus atys	CERAT04724	1:1	A0A2K5NHU7
			E	Chlorocebus sabaeus	CHLSB06328	1:1	A0A0D9RFS5
			E	Macaca fascicularis	MACFA32253	1:1	A0A2K5VHG8
			E	Macaca mulatta	MACMU34756	1:1	A0A1D5RC96
			E	Macaca nemestrina	MACNE36416	1:1	A0A2K6AQL0
			E	Mandrillus leucophaeus	MANLE00644	1:1	A0A2K6A5K9
			E	Papio anubis	PAPAN34202	1:1	A0A096NI25
			E	Colobus angolensis palliatus	COLAP20898	1:1	A0A2K5JPS9
			E	Rhinopithecus bieti	RHIBE05077	1:1	A0A2K6N3S4

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