Pairwise Orthologs for HUMAN83916

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Gene HUMAN83916 (TNFB_HUMAN)

E Homo sapiens | Lymphotoxin-alpha [LTA]

‹

Loading, please wait...

Evidence			Domains	Taxon	Protein ID	Relation type	Cross reference	Domain Architectures
Pair	HOG	OMA	Domains	Taxon	Protein ID	Relation type	Cross reference	Domain Architectures
			E	Anguilla anguilla	ANGAN03458		XP_035267073
			E	Echeneis naucrates	ECHNA26851		A0A665UAW2
			E	Scophthalmus maximus	SCOMX15585		C0L2S2
			E	Gasterosteus aculeatus	GASAC13992		G3NHD0
			E	Mola mola	MOLML14841		A0A3Q3WVC4
			E	Kryptolebias marmoratus	KRYMA27404		A0A3Q3ENH3
			E	Cyprinodon variegatus	CYPVA30146		A0A3Q2FG95
			E	Poecilia formosa	POEFO23245		A0A087Y308
			E	Poecilia reticulata	POERE32772		A0A3P9PDZ6
			E	Salarias fasciatus	SALFA30819		A0A672FZS9
			E	Amphiprion percula	AMPPE02330		A0A3P8U3S6
			E	Hippocampus comes	HIPCM07978		A0A3Q2X979
			E	Esox lucius	ESOLU59153		A0A3P9A6E9
			E	Pygocentrus nattereri	PYGNA19484		A0A3B4EMD7
			E	Sinocyclocheilus grahami	SINGR51439		A0A672LIT8
			E	Ornithorhynchus anatinus	ORNAN32910		A0A6I8PG72
			E	Tachyglossus aculeatus	TACAU26854		XP_038624131
			E	Procavia capensis	PROCA03156		ENSPCAG00000007526
			E	Loxodonta africana	LOXAF01867		G3T0Q4
			E	Echinops telfairi	ECHTE06132		ENSETEG00000003189
			E	Oryctolagus cuniculus	RABIT02186		TNFB_RABIT
			E	Ochotona princeps	OCHPR13202		ENSOPRG00000011942
			E	Dipodomys ordii	DIPOR20951		A0A0U5J5Q2
			E	Fukomys damarensis	FUKDA21838		ENSFDAG00000006994.1
			E	Heterocephalus glaber	HETGA14690		G5C3E1

Showing 1 to 25 of 25 rows rows per page