Pairwise Orthologs for HUMAN80855

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Gene HUMAN80855 (H2AY_HUMAN)

E Homo sapiens | Core histone macro-H2A.1 [MACROH2A1]

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This entry is not the isoform used for orthologs inferences, orthologs below are inferred using the entry isoform HUMAN80854.

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Evidence			Domains	Taxon	Protein ID	Relation type	Cross reference	Domain Architectures
Pair	HOG	OMA	Domains	Taxon	Protein ID	Relation type	Cross reference	Domain Architectures
			E	Branchiostoma floridae	BRAFL09135		A0A9J7MJ48
			E	Branchiostoma lanceolatum	BRALA20677		BL13023
			E	Petromyzon marinus	PETMA00786		S4RTE4
			E	Scyliorhinus torazame	SCYTO10396		A0A401P7X3
			E	Chiloscyllium punctatum	CHIPU02337		A0A401S0P3
			E	Callorhinchus milii	CALMI28166		A0A4W3HBN3
			E	Lepisosteus oculatus	LEPOC14947		W5MVJ3
			E	Anguilla anguilla	ANGAN31973		XP_035290610
			E	Anabas testudineus	ANATE07127		A0A3Q1ICQ1
			E	Seriola dumerili	SERDU12619		A0A3B4T279
			E	Echeneis naucrates	ECHNA45050		A0A665X440
			E	Cynoglossus semilaevis	CYNSE14780		A0A3P8WHV0
			E	Scophthalmus maximus	SCOMX23775		A0A8D3A3T9
			E	Dicentrarchus labrax	DICLA11200		A0A8P4KH15
			E	Sparus aurata	SPAAU21298		A0A671Y4B3
			E	Mola mola	MOLML09996		A0A3Q3X6E8
			E	Takifugu rubripes	TAKRU13195		A0A674NJY5
			E	Tetraodon nigroviridis	TETNG12455		H3DFA2
			E	Oryzias javanicus	ORYJA12634		ENSOJAG00000010208.1
			E	Oryzias latipes	ORYLA03872		ENSORLG00000000850
			E	Oryzias melastigma	ORYME12898		A0A3B3B9M9
			E	Nothobranchius furzeri	NOTFU18425		A0A1A8UWR3
			E	Kryptolebias marmoratus	KRYMA13011		A0A3Q3B765
			E	Cyprinodon variegatus	CYPVA14524		A0A3Q2DJN7
			E	Gambusia affinis	GAMAF04964		ENSGAFG00000007231.1

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