Pairwise Orthologs for HUMAN60808

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Gene HUMAN60808 (RPC8_HUMAN)

E Homo sapiens | DNA-directed RNA polymerase III subunit RPC8 [POLR3H]

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This entry is not the isoform used for orthologs inferences, orthologs below are inferred using the entry isoform HUMAN60803.

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Evidence			Domains	Taxon	Protein ID	Relation type	Cross reference	Domain Architectures
Pair	HOG	OMA	Domains	Taxon	Protein ID	Relation type	Cross reference	Domain Architectures
			A	Odinarchaeota archaeon (strain LCB_4)	ODILC01088		rpoE1
			A	Thermococci archaeon B88_G9	UC12800650		DRN46_03455
			A	Methanoregula boonei (strain DSM 21154 / JCM 14090 / 6A8)	METB600243		WP_011991255
			A	Methanoregula formicica (strain DSM 22288 / NBRC 105244 / SMSP)	METFS02761		WP_015286812
			A	Methanosphaerula palustris (strain ATCC BAA-1556 / DSM 19958 / E1-9c)	METPE00578		WP_012617293
			A	Candidatus Methanohalarchaeum thermophilum HMET1	UC15900689		BTN85_0710
			A	Methanosarcina acetivorans (strain ATCC 35395 / DSM 2834 / JCM 12185 / C2A)	METAC03520		A0A832SJI5
			A	Methanosarcina barkeri (strain Fusaro / DSM 804)	METBF00274		WP_011305324
			A	Methanobrevibacter smithii (strain ATCC 35061 / DSM 861 / OCM 144 / PS)	METS300195		Msm_0197
			A	Methanocaldococcus fervens (strain DSM 4213 / JCM 15782 / AG86)	METFA00848		WP_015791427
			A	Methanococcus vannielii (strain ATCC 35089 / DSM 1224 / JCM 13029 / OCM 148 / SB)	METVS01389		WP_012066235
			A	Methanothermococcus okinawensis (strain DSM 14208 / JCM 11175 / IH1)	METOI00218		WP_013866405
			A	Methanotorris igneus (strain DSM 5666 / JCM 11834 / Kol 5)	METIK00999		WP_013799174
			A	Methanopyrus kandleri (strain AV19 / DSM 6324 / JCM 9639 / NBRC 100938)	METKA01450		A0A832T2I5
			A	Pyrococcus abyssi (strain GE5 / Orsay)	PYRAB01685		WP_010868803
			A	Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1)	PYRFU00254		PF0256
			A	Pyrococcus horikoshii (strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3)	PYRHO01981		A0A832T367
			A	Pyrococcus sp. (strain NA2)	PYRSN00897		PNA2_0899
			A	Pyrococcus yayanosii (strain CH1 / JCM 16557)	PYRYC01295		WP_013906064
			A	Thermococcus gammatolerans (strain DSM 15229 / JCM 11827 / EJ3)	THEGJ00500		WP_015858119
			A	Thermococcus kodakarensis (strain ATCC BAA-918 / JCM 12380 / KOD1)	THEKO01696		WP_011250650
			A	Thermococcus onnurineus (strain NA1)	THEON01921		TON_1913
			A	Thermococcus litoralis (strain ATCC 51850 / DSM 5473 / JCM 8560 / NS-C)	THELN00987		OCC_01494
			A	Thermococcus sibiricus (strain DSM 12597 / MM 739)	THESM00025		A0A101EMP8
			A	Archaeon GW2011_AR15	ARCG300917		QT06_C0001G0943

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