Pairwise Orthologs for HUMAN56246

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Gene HUMAN56246 (A0A2R8Y6X2)

E Homo sapiens | D-aminoacyl-tRNA deacylase [DTD1]

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This entry is not the isoform used for orthologs inferences, orthologs below are inferred using the entry isoform HUMAN56247.

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Evidence			Domains	Taxon	Protein ID	Relation type	Cross reference	Domain Architectures
Pair	HOG	OMA	Domains	Taxon	Protein ID	Relation type	Cross reference	Domain Architectures
			A	Methanobrevibacter ruminantium (strain ATCC 35063 / DSM 1093 / JCM 13430 / OCM 146 / M1)	METRM00136		WP_012954945
			A	Methanosphaera stadtmanae (strain ATCC 43021 / DSM 3091 / JCM 11832 / MCB-3)	METST00753		Q2NG79
			B	Candidatus Cloacimonetes bacterium 4572_55	UC15500198		B6244_05070
			B	Calditrichaeota bacterium co234_bin30	UC01503135		HN356_12930
			B	candidate division LCP-89 bacterium B3_LCP	UC10901312		CEE37_02495
			B	Calditrichaeota bacterium SuakinDeep_MAG45_3	UC01601371		MAG453_00700
			B	Candidatus Abyssubacteria bacterium SURF_5	UC13302844		C4520_09160
			B	Koribacter versatilis (strain Ellin345)	KORVE04491		KORVE_A.4497
			B	bacterium (candidate division B38) B3_B38	UC11000299		CEE39_05905
			B	Chloracidobacterium thermophilum (strain B)	CHLTF00988		Cabther_A1015
			B	Sulfidibacter corallicola	SULCO03701		J3U87_18725
			B	Acidobacteria bacterium Mor1	UC17300556		ABI59_03280
			B	Holophagales bacterium EsbW_18-Q3-R4-48_BAT3C.4_cln	UC06402785		IPJ17_14235
			B	Acidobacteria bacterium s2_autometa_2-0	UC10103384		GKS06_16775
			B	Luteitalea pratensis	LUTPR03356		dtd
			B	Acidothermus cellulolyticus (strain ATCC 43068 / DSM 8971 / 11B)	ACIC100063		WP_011718903
			B	Arcanobacterium haemolyticum (strain ATCC 9345 / DSM 20595 / CCUG 17215 / LMG 16163 / NBRC 15585 / NCTC 8452 / 11018)	ARCHD00218		WP_013169485
			B	Mobiluncus curtisii (strain ATCC 43063 / DSM 2711 / V125)	MOBCV00429		dtd
			B	Beutenbergia cavernae (strain ATCC BAA-8 / DSM 12333 / NBRC 16432)	BEUC103383		C5C226
			B	Bifidobacterium adolescentis (strain ATCC 15703 / DSM 20083 / NCTC 11814 / E194a)	BIFAA00965		WP_011743332
			B	Bifidobacterium animalis subsp. animalis (strain ATCC 25527 / DSM 20104 / JCM 1190 / R101-8)	BIFAR01138		BANAN_05815
			B	Bifidobacterium animalis subsp. lactis (strain AD011)	BIFA000741		B8DSS1
			B	Bifidobacterium animalis subsp. lactis (strain BB-12)	BIFAB00055		A0A315S5X3
			B	Bifidobacterium animalis subsp. lactis (strain Bl-04 / DGCC2908 / RB 4825 / SD5219)	BIFLB01135		Balac_1178
			B	Bifidobacterium animalis subsp. lactis (strain DSM 10140 / JCM 10602 / LMG 18314)	BIFAS01135		Balat_1178

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