Pairwise Orthologs for HUMAN54000

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Gene HUMAN54000 (ASPM_HUMAN)

E Homo sapiens | Abnormal spindle-like microcephaly-associated prot [ASPM]

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Evidence			Domains	Taxon	Protein ID	Relation type	Cross reference	Domain Architectures
Pair	HOG	OMA	Domains	Taxon	Protein ID	Relation type	Cross reference	Domain Architectures
			E	Scyliorhinus torazame	SCYTO07016		A0A401NLI1
			E	Chiloscyllium punctatum	CHIPU09594		A0A401SLE5
			E	Callorhinchus milii	CALMI19548		A0A4W3JTQ1
			E	Lepisosteus oculatus	LEPOC01532		W5ML42
			E	Anguilla anguilla	ANGAN16167		XP_035268916
			E	Anabas testudineus	ANATE17876		A0A3Q1GYI5
			E	Seriola dumerili	SERDU09563		A0A3B4V032
			E	Echeneis naucrates	ECHNA35313		A0A665TFE6
			E	Cynoglossus semilaevis	CYNSE20636		A0A3P8UQZ5
			E	Scophthalmus maximus	SCOMX03646		ENSSMAG00000018889.1
			E	Dicentrarchus labrax	DICLA36405		A0A8C4H5V6
			E	Sparus aurata	SPAAU68576		A0A671VNW8
			E	Takifugu rubripes	TAKRU27344		A0A674N6Q8
			E	Tetraodon nigroviridis	TETNG01175		H3D460
			E	Oryzias javanicus	ORYJA23415		ENSOJAG00000005674.1
			E	Oryzias latipes	ORYLA13310		ENSORLG00000012201
			E	Oryzias melastigma	ORYME14550		A0A3B3C0Z9
			E	Nothobranchius furzeri	NOTFU26060		A0A8C6M5N5
			E	Gambusia affinis	GAMAF16457		ENSGAFG00000011212.1
			E	Poecilia formosa	POEFO18732		A0A087X5L3
			E	Poecilia reticulata	POERE24930		A0A3P9QHW5
			E	Xiphophorus maculatus	XIPMA35688		M3ZES9
			E	Astatotilapia calliptera	ASTCA13863		A0A3P8R918
			E	Oreochromis aureus	OREAU24276		A0A668VDN2
			E	Oreochromis niloticus	ORENI23683		A0A669EUL8

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