Pairwise Orthologs for HUMAN49034

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Gene HUMAN49034 (S4R3C5)

E Homo sapiens | tRNA isopentenyltransferase 1 [TRIT1]

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This entry is not the isoform used for orthologs inferences, orthologs below are inferred using the entry isoform HUMAN49025.

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Evidence			Domains	Taxon	Protein ID	Relation type	Cross reference	Domain Architectures
Pair	HOG	OMA	Domains	Taxon	Protein ID	Relation type	Cross reference	Domain Architectures
			B	Candidatus Cloacimonetes bacterium 4572_55	UC15500195		B6244_05055
			B	Kribbella flavida (strain DSM 17836 / JCM 10339 / NBRC 14399)	KRIFD05888		WP_012923576
			B	Propionibacterium freudenreichii subsp. shermanii (strain ATCC 9614 / DSM 4902 / CIP 103027 / NCIMB 8099 / CIRM-BIA1)	PROFC01284		A0A0A8Q522
			B	Bernardetia litoralis (strain ATCC 23117 / DSM 6794 / NBRC 15988 / NCIMB 1366 / Fx l1 / Sio-4)	BERLS00458		WP_014796447
			B	Chlorobaculum tepidum (strain ATCC 49652 / DSM 12025 / NBRC 103806 / TLS)	CHLTE00959		Q8KDS2
			B	Chlorobium chlorochromatii (strain CaD3)	CHLCH01364		Q3AQS3
			B	Chlorobium limicola (strain DSM 245 / NBRC 103803 / 6330)	CHLL200920		WP_012465914
			B	Chlorobium luteolum (strain DSM 273 / BCRC 81028 / 2530)	CHLL301145		Q3B3N9
			B	Chlorobium phaeobacteroides (strain DSM 266)	CHLPD01024		Cpha266_1081
			B	Bdellovibrionales bacterium SZAS-2	U02BD02927		miaA
			B	Fluviispira sanaruensis	FLUSA01358		JCM31447_13870
			B	bacterium new MAG-396	UC04901951		miaA
			B	Candidatus Zymogeniaceaea bacterium Zod_Metabat.1292	UC03600030		miaA
			B	Candidatus Dadabacteria bacterium MH-Pat-all_metabat2_32	UC09000537		miaA
			B	Geobacillus sp. (strain Y4.1MC1)	GEOS002359		GY4MC1_2561
			B	Parageobacillus thermoglucosidasius (strain C56-YS93)	PARTC02358		WP_013877177
			B	Geobacillus sp. (strain WCH70)	GEOSW01088		GWCH70_1222
			B	Bacillus amyloliquefaciens (strain ATCC 23350 / DSM 7 / BCRC 11601 / CCUG 28519 / NBRC 15535 / NRRL B-14393 / F)	BACAS01802		miaA
			B	Bacillus velezensis (strain DSM 23117 / BGSC 10A6 / LMG 26770 / FZB42)	BACVZ01627		RBAM_017130
			B	Agathobacter rectalis (strain ATCC 33656 / DSM 3377 / JCM 17463 / KCTC 5835 / VPI 0990)	AGARV01610		EUBREC_1748
			B	Desulfofarcimen acetoxidans (strain ATCC 49208 / DSM 771 / KCTC 5769 / VKM B-1644 / 5575)	DESAS01965		WP_015757662
			B	Chlamydiae bacterium NC_groundwater_60_Pr7_S-0.65um_42_121	U02CA01479		miaA
			B	Stigmatella aurantiaca (strain DW4/3-1)	STIAD04180		WP_013376133
			B	Myxococcales bacterium EAC29	U01MY01877		miaA
			B	Deltaproteobacteria bacterium Fred_18-Q3-R57-64_BAT3C.701	U02DE00445		miaA

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