Pairwise Orthologs for HUMAN23957

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Gene HUMAN23957 (KPYM_HUMAN)

E Homo sapiens | Pyruvate kinase PKM [PKM]

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This entry is not the isoform used for orthologs inferences, orthologs below are inferred using the entry isoform HUMAN23959.

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Evidence			Domains	Taxon	Protein ID	Relation type	Cross reference	Domain Architectures
Pair	HOG	OMA	Domains	Taxon	Protein ID	Relation type	Cross reference	Domain Architectures
			A	Methanocaldococcus vulcanius (strain ATCC 700851 / DSM 12094 / M7)	METVM01089		WP_015733184
			A	Methanococcus maripaludis (strain C6 / ATCC BAA-1332)	METM601052		MmarC6_1065
			A	Pyrobaculum calidifontis (strain DSM 21063 / JCM 11548 / VA1)	PYRCJ00029		WP_011848726
			A	Pyrobaculum islandicum (strain DSM 4184 / JCM 9189 / GEO3)	PYRIL01091		WP_011762852
			B	Mobiluncus curtisii (strain ATCC 43063 / DSM 2711 / V125)	MOBCV00628		A0A2X3AKJ4
			B	Actinoplanes missouriensis (strain ATCC 14538 / DSM 43046 / CBS 188.64 / JCM 3121 / NBRC 102363 / NCIMB 12654 / NRRL B-3342 / UNCC 431)	ACTM401570		WP_014441690
			B	Mycolicibacterium rhodesiae (strain NBB3)	MYCRN04374		MycrhN_4579
			B	Belliella baltica (strain DSM 15883 / CIP 108006 / LMG 21964 / BA134)	BELBD03139		WP_014773822
			B	Echinicola vietnamensis (strain DSM 17526 / LMG 23754 / KMM 6221)	ECHVK02244		WP_015266122
			B	Elusimicrobia bacterium HGW-Elusimicrobia-2	UC14500240		pyk
			B	Elusimicrobia bacterium Zod_Metabat.862	UC02700296		pyk
			B	Chloroflexi bacterium Baikal-deep-G117	U03CH00380		pyk
			B	Phytoplasma australiense	PHYAS00053		PA0061
			B	Mycoplasma arthritidis (strain 158L3-1)	MYCA500032		WP_012497957
			B	Mycoplasmopsis synoviae (strain 53)	MYCS500640		WP_041352132
			B	Mycoplasma haemolamae (strain Purdue)	MYCHA00686		AFO52266
			B	Mycoplasma suis (strain Illinois)	MYCSL00681		pyk
			B	Mycoplasma suis (strain KI_3806)	MYCS300657		pykF
			B	Mycoplasma haemocanis (strain Illinois)	MYCHN01099		WP_014273010
			B	Mycoplasma haemofelis (strain Langford 1)	MYCHL01472		MYCHL_Chromosome.147
			B	Mycoplasma haemofelis (strain Ohio2)	MYCHI01456		pyk
			B	Mycoplasma gallisepticum (strain F)	MYCGF00322		A0A3B0Q1I3
			B	Mycoplasma gallisepticum (strain R(high / passage 156))	MYCGH00501		A0A3B0Q1I3
			B	Mycoplasma gallisepticum (strain R(low / passage 15 / clone 2))	MYCGA00478		A0A3B0Q1I3
			B	Mycoplasma genitalium (strain ATCC 33530 / G-37 / NCTC 10195)	MYCGE00221		P47458

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