Pairwise Orthologs for HUMAN23312

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Gene HUMAN23312 (GRL1A_HUMAN)

E Homo sapiens | DNA-directed RNA polymerase II subunit GRINL1A [POLR2M]

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Evidence			Domains	Taxon	Protein ID	Relation type	Cross reference	Domain Architectures
Pair	HOG	OMA	Domains	Taxon	Protein ID	Relation type	Cross reference	Domain Architectures
			E	Scyliorhinus torazame	SCYTO13096	1:1	A0A401NT63
			E	Chiloscyllium punctatum	CHIPU10423	1:1	A0A401SNS7
			E	Callorhinchus milii	CALMI04783	1:1	V9KYD8
			E	Anabas testudineus	ANATE13628	1:1	A0A7N6A801
			E	Seriola dumerili	SERDU05552	1:1	A0A3B4V3C3
			E	Echeneis naucrates	ECHNA23930	1:1	A0A665U7J1
			E	Cynoglossus semilaevis	CYNSE00028	1:1	A0A3P8WSY4
			E	Scophthalmus maximus	SCOMX25971	1:1	A0A8D2ZDV4
			E	Dicentrarchus labrax	DICLA39713	1:1	A0A8C4FC96
			E	Sparus aurata	SPAAU27071	1:1	A0A671YMV6
			E	Mola mola	MOLML05814	1:1	A0A3Q3X0Q5
			E	Takifugu rubripes	TAKRU09386	1:1	A0A3B5K3E5
			E	Oryzias javanicus	ORYJA16244	1:1	ENSOJAG00000023719.1
			E	Nothobranchius furzeri	NOTFU11870	1:1	A0A1A8UKR8
			E	Kryptolebias marmoratus	KRYMA02937	1:1	A0A3Q3FAY0
			E	Cyprinodon variegatus	CYPVA20611	1:1	A0A3Q2CHE6
			E	Gambusia affinis	GAMAF17974	1:1	A0A315V167
			E	Poecilia formosa	POEFO19254	1:1	A0A096MH83
			E	Poecilia reticulata	POERE24154	1:1	A0A3P9QJN2
			E	Xiphophorus maculatus	XIPMA28254	1:1	M4AIV8

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