Pairwise Orthologs for HUMAN15059

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Gene HUMAN15059 (TRXR1_HUMAN)

E Homo sapiens | Thioredoxin reductase 1, cytoplasmic [TXNRD1]

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This entry is not the isoform used for orthologs inferences, orthologs below are inferred using the entry isoform HUMAN15069.

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Evidence			Domains	Taxon	Protein ID	Relation type	Cross reference	Domain Architectures
Pair	HOG	OMA	Domains	Taxon	Protein ID	Relation type	Cross reference	Domain Architectures
			A	Odinarchaeota archaeon (strain LCB_4)	ODILC00572		mtr
			A	Ignicoccus hospitalis (strain KIN4/I / DSM 18386 / JCM 14125)	IGNH400669		Igni_0671
			B	Saccharopolyspora erythraea (strain ATCC 11635 / DSM 40517 / JCM 4748 / NBRC 13426 / NCIMB 8594 / NRRL 2338)	SACEN05753		WP_009943708
			B	Streptococcus suis (strain 05ZYH33)	STRSY00681		WP_011922225
			B	Nitrospira moscoviensis	NITMO04732		ALA61176
			E	Branchiostoma floridae	BRAFL13353		A0A9J7MS21
			E	Eptatretus burgeri	EPTBU11442		A0A8C4Q2G5
			E	Scyliorhinus torazame	SCYTO08166		A0A401P6F0
			E	Chiloscyllium punctatum	CHIPU10683		A0A401SPI7
			E	Callorhinchus milii	CALMI18806		A0A4W3HVR2
			E	Ornithorhynchus anatinus	ORNAN05609		A0A6I8P7T9
			E	Tachyglossus aculeatus	TACAU16185		XP_038612158
			E	Procavia capensis	PROCA10169		ENSPCAG00000008775
			E	Loxodonta africana	LOXAF19813		G3TF14
			E	Echinops telfairi	ECHTE09996		ENSETEG00000013829
			E	Oryctolagus cuniculus	RABIT10696		ENSOCUG00000003961.3
			E	Ochotona princeps	OCHPR15089		ENSOPRG00000009019
			E	Dipodomys ordii	DIPOR01486		A0A1S3FKP8
			E	Fukomys damarensis	FUKDA12329		ENSFDAG00000006433.1
			E	Heterocephalus glaber	HETGA22456		ENSHGLG00100003685.1
			E	Cavia aperea	CAVAP17749		ENSCAPG00000012742.1
			E	Cavia porcellus	CAVPO24289		H0VKC2
			E	Chinchilla lanigera	CHILA01281		A0A8C2VBH2
			E	Octodon degus	OCTDE01139		A0A6P6EL73
			E	Jaculus jaculus	JACJA01304		A0A8C5KFG6

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