Pairwise Orthologs for HUMAN13930

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Gene HUMAN13930 (F8W0H4)

E Homo sapiens | ubiquitinyl hydrolase 1 [USP15]

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This entry is not the isoform used for orthologs inferences, orthologs below are inferred using the entry isoform HUMAN13932.

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Evidence			Domains	Taxon	Protein ID	Relation type	Cross reference	Domain Architectures
Pair	HOG	OMA	Domains	Taxon	Protein ID	Relation type	Cross reference	Domain Architectures
			E	Entamoeba invadens IP1	ENTIV10913		A0A0A1TW26
			E	Protomyces lactucaedebilis	PROLT03623		A0A1Y2FBX4
			E	Microbotryum lychnidis-dioicae (strain p1A1 Lamole / MvSl-1064)	USTV102458		U5H4T0
			E	Allomyces macrogynus (strain ATCC 38327)	ALLM304638		A0A0L0S864
			E	Branchiostoma floridae	BRAFL42547		A0A9J7HTJ0
			E	Branchiostoma lanceolatum	BRALA18937		BL20942
			E	Petromyzon marinus	PETMA00077		S4RHF9
			E	Eptatretus burgeri	EPTBU02205		A0A8C4R1T8
			E	Scyliorhinus torazame	SCYTO07702		A0A401NY82
			E	Chiloscyllium punctatum	CHIPU13278		A0A401SWW4
			E	Callorhinchus milii	CALMI18734		A0A4W3HM42
			E	Lepisosteus oculatus	LEPOC16900		W5NK48
			E	Anguilla anguilla	ANGAN57366		XP_035258174
			E	Anabas testudineus	ANATE02158		ENSATEG00000006976.1
			E	Seriola dumerili	SERDU03979		A0A3B4UA98
			E	Echeneis naucrates	ECHNA42768		A0A665WTL1
			E	Cynoglossus semilaevis	CYNSE29050		A0A3P8VU93
			E	Scophthalmus maximus	SCOMX20996		ENSSMAG00000018943.1
			E	Dicentrarchus labrax	DICLA51164		A0A8C4F190
			E	Gasterosteus aculeatus	GASAC21303		G3Q5F6
			E	Sparus aurata	SPAAU48312		A0A671TUP5
			E	Mola mola	MOLML00844		A0A3Q3VWH6
			E	Tetraodon nigroviridis	TETNG07597		H3CMZ5
			E	Oryzias javanicus	ORYJA04498		ENSOJAG00000010175.1
			E	Oryzias melastigma	ORYME26256		A0A3B3DKH5

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