Pairwise Orthologs for HUMAN13576

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Gene HUMAN13576 (NACAM_HUMAN)

E Homo sapiens | Nascent polypeptide-associated complex subunit alp [NACA]

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This entry is not the isoform used for orthologs inferences, orthologs below are inferred using the entry isoform HUMAN13577.

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Evidence			Domains	Taxon	Protein ID	Relation type	Cross reference	Domain Architectures
Pair	HOG	OMA	Domains	Taxon	Protein ID	Relation type	Cross reference	Domain Architectures
			B	Sulfidibacter corallicola	SULCO04216		J3U87_21345
			B	Beutenbergia cavernae (strain ATCC BAA-8 / DSM 12333 / NBRC 16432)	BEUC101749		Bcav_1759
			B	Cellulomonas flavigena (strain ATCC 482 / DSM 20109 / BCRC 11376 / JCM 18109 / NBRC 3775 / NCIMB 8073 / NRS 134)	CELFN02166		WP_013117423
			B	Xylanimonas cellulosilytica (strain DSM 15894 / CECT 5975 / LMG 20990 / XIL07)	XYLCX00482		WP_012877267
			B	Arthrobacter sp. (strain FB24)	ARTS201278		Arth_1287
			B	Frankia inefficax (strain DSM 45817 / CECT 9037 / EuI1c)	FRAIE03022		FraEuI1c_3090
			B	Frankia sp. (strain EAN1pec)	FRASN03825		Franean1_3954
			B	Gordonia bronchialis (strain ATCC 25592 / DSM 43247 / BCRC 13721 / JCM 3198 / KCTC 3076 / NBRC 16047 / NCTC 10667)	GORB402269		Gbro_2429
			B	Saccharopolyspora erythraea (strain ATCC 11635 / DSM 40517 / JCM 4748 / NBRC 13426 / NCIMB 8594 / NRRL 2338)	SACEN01425		WP_009947686
			B	Arachnia propionica (strain F0230a)	ARAPF00817		WP_014845982
			B	Streptomyces davaonensis (strain DSM 101723 / JCM 4913 / KCC S-0913 / 768)	STRDJ07447		BN159_7447
			B	Streptomyces fradiae	STRFR00390		KDS89590
			B	Abitibacteriaceae bacterium CP_BM_RX_R8_36	UC00303742		JO316_03385
			B	Spirosoma linguale (strain ATCC 33905 / DSM 74 / LMG 10896)	SPILD03976		Slin_4115
			B	Cellulophaga algicola (strain DSM 14237 / IC166 / ACAM 630)	CELAD01231		WP_013550097
			B	Flavobacterium indicum (strain DSM 17447 / CIP 109464 / GPTSA100-9)	FLAIG00755		WP_014387921
			B	Chlorobi bacterium Kalu_18-Q3-R12-55_MAXAC.169	UC05901088		IPM61_05540
			B	Lyngbya sp. (strain PCC 8106)	LYNSP02033		L8106_12840
			B	Desulfovibrio vulgaris (strain DSM 19637 / Miyazaki F)	DESVM01045		DvMF_1052
			B	Lactobacillus amylovorus (strain GRL 1118)	LACAL01235		LAB52_06545
			B	Staphylococcus lugdunensis (strain HKU09-01)	STALH02228		WP_012991022
			B	Desulfofarcimen acetoxidans (strain ATCC 49208 / DSM 771 / KCTC 5769 / VKM B-1644 / 5575)	DESAS02868		Dtox_3121
			B	Nitrospirae bacterium NC_groundwater_240_Ag_S-0.2um_61_13	U01NT02010		HYT87_15125
			B	Candidatus Termititenax aidoneus NkOx7-01	UC12200375		NO1_0375
			B	Anaeromyxobacter dehalogenans (strain 2CP-1 / ATCC BAA-258)	ANAD201900		A2cp1_1926

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