Pairwise Orthologs for HUMAN12106

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Gene HUMAN12106 (F8VR40)

E Homo sapiens | Interleukin 1 receptor associated kinase 4 [IRAK4]

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This entry is not the isoform used for orthologs inferences, orthologs below are inferred using the entry isoform HUMAN12109.

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Evidence			Domains	Taxon	Protein ID	Relation type	Cross reference	Domain Architectures
Pair	HOG	OMA	Domains	Taxon	Protein ID	Relation type	Cross reference	Domain Architectures
			E	Entamoeba invadens IP1	ENTIV01628		A0A0A1UCS7
			E	Naegleria gruberi strain NEG-M	NAEGR04924		D2VMW9
			E	Coprinopsis cinerea	COPCI14275		fgeneshDR_te_pg.Chr_
			E	Coprinopsis cinerea (strain Okayama-7 / 130 / ATCC MYA-4618 / FGSC 9003)	COPC700540		A8NWS9
			E	Rhizophagus irregularis (strain DAOM 197198w)	RHIIW02914		A0A015KN89
			E	Branchiostoma floridae	BRAFL13985		A0A9J7L565
			E	Branchiostoma lanceolatum	BRALA28136		BL08195
			E	Petromyzon marinus	PETMA09061		S4R4W2
			E	Eptatretus burgeri	EPTBU19875		A0A8C4Q0B8
			E	Scyliorhinus torazame	SCYTO11449		A0A401NR64
			E	Chiloscyllium punctatum	CHIPU10211		A0A401SN66
			E	Callorhinchus milii	CALMI33930		A0A4W3IYA9
			E	Lepisosteus oculatus	LEPOC17811		W5M0F9
			E	Anguilla anguilla	ANGAN57315		XP_035258230
			E	Anabas testudineus	ANATE22554		ENSATEG00000018652.1
			E	Seriola dumerili	SERDU10223		A0A3B4VM83
			E	Echeneis naucrates	ECHNA54963		A0A665X7Y9
			E	Cynoglossus semilaevis	CYNSE25846		A0A3P8VC72
			E	Scophthalmus maximus	SCOMX00424		A0A2U9BWA7
			E	Dicentrarchus labrax	DICLA42292		XP_051238374
			E	Gasterosteus aculeatus	GASAC15178		G3NJ16
			E	Sparus aurata	SPAAU45805		A0A671YFE4
			E	Mola mola	MOLML15504		A0A3Q3XAK3
			E	Takifugu rubripes	TAKRU52189		A0A3B5K2L4
			E	Tetraodon nigroviridis	TETNG04016		H3DEX7

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