Pairwise Orthologs for HUMAN100260

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Gene HUMAN100260 (DDX3X_HUMAN)

E Homo sapiens | ATP-dependent RNA helicase DDX3X [DDX3X]

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This entry is not the isoform used for orthologs inferences, orthologs below are inferred using the entry isoform HUMAN100267.

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Evidence			Domains	Taxon	Protein ID	Relation type	Cross reference	Domain Architectures
Pair	HOG	OMA	Domains	Taxon	Protein ID	Relation type	Cross reference	Domain Architectures
			B	Brevibacterium linens	BRELN02897		AE0388_0637
			B	Intrasporangium calvum (strain ATCC 23552 / DSM 43043 / JCM 3097 / NBRC 12989 / 7 KIP)	INTC700223		ADU46785
			B	Cutibacterium acnes (strain DSM 16379 / KPA171202)	CUTAK01750		PPA1787
			B	Cutibacterium acnes (strain SK137)	CUTAS01783		HMPREF0675_4844
			B	Haliangium ochraceum (strain DSM 14365 / JCM 11303 / SMP-2)	HALO100327		WP_012825596
			B	Pirellula staleyi (strain ATCC 27377 / DSM 6068 / ICPB 4128)	PIRSD01344		WP_012910307
			B	Rubinisphaera brasiliensis (strain ATCC 49424 / DSM 5305 / JCM 21570 / NBRC 103401 / IFAM 1448)	RUBBR01505		WP_013627886
			B	Pusillimonas sp. (strain T7-7)	PUSST03053		PT7_3071
			B	Ralstonia solanacearum (strain Po82)	RALS802794		RSPO_c02847
			B	Rhodoferax ferrireducens (strain ATCC BAA-621 / DSM 15236 / T118)	RHOFT01374		WP_011463714
			B	Azospira oryzae (strain ATCC BAA-33 / DSM 13638 / PS)	AZOOP03070		Dsui_3174
			E	Acanthamoeba castellanii str. Neff	ACACA00729		L8HIH0
			E	Entamoeba histolytica	ENTHI03173		A0A5K1V1S6
			E	Entamoeba histolytica (strain ATCC 30459 / HM-1:IMSS / ABRM)	ENTH102863		A0A5K1V1S6
			E	Entamoeba invadens IP1	ENTIV07169		A0A0A1U2R6
			E	Entamoeba nuttalli (strain P19)	ENTNP02144		K2H3C0
			E	Dictyostelium discoideum	DICDI07582		DDX3_DICDI
			E	Dictyostelium purpureum	DICPU07427		F0ZSC7
			E	Leishmania donovani (strain BPK282A1)	LEIDB01703		A0A3Q8IF94
			E	Leishmania infantum	LEIIN02096		A0A6L0XLA9
			E	Leishmania major strain Friedlin	LEIMA04855		Q4Q5P5
			E	Leishmania mexicana (strain MHOM/GT/2001/U1103)	LEIMU05197		E9B2G1
			E	Leishmania braziliensis	LEIBR01728		A4HK20
			E	Leptomonas pyrrhocoris	LEPPY01908		A0A0N0VGY5
			E	Leptomonas seymouri	LEPSE01251		A0A0N1I7N1

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