Pairwise Orthologs for HUMAN09034

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Gene HUMAN09034 (MMP1_HUMAN)

E Homo sapiens | Interstitial collagenase [MMP1]

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Evidence			Domains	Taxon	Protein ID	Relation type	Cross reference	Domain Architectures
Pair	HOG	OMA	Domains	Taxon	Protein ID	Relation type	Cross reference	Domain Architectures
			E	Ornithorhynchus anatinus	ORNAN13746		F7B3A2
			E	Procavia capensis	PROCA01315		ENSPCAG00000005264
			E	Loxodonta africana	LOXAF08909		G3SNY5
			E	Echinops telfairi	ECHTE14707		ENSETEG00000016822
			E	Oryctolagus cuniculus	RABIT00671		MMP1_RABIT
			E	Ochotona princeps	OCHPR04302		ENSOPRG00000002041
			E	Dipodomys ordii	DIPOR02943		A0A1S3ENE7
			E	Fukomys damarensis	FUKDA05904		A0A091D0M2
			E	Cavia porcellus	CAVPO10047		H0V812
			E	Chinchilla lanigera	CHILA03276		A0A8C2VJT7
			E	Jaculus jaculus	JACJA13323		A0A8C5K593
			E	Cricetulus griseus	CRIGR01601		ENSCGRG00000017289.1
			E	Nannospalax galili	NANGA19772		A0A8C6QYN4
			E	Ictidomys tridecemlineatus	ICTTR18899		ENSSTOG00000008571
			E	Cercocebus atys	CERAT19492		A0A2K5P0B7
			E	Chlorocebus sabaeus	CHLSB00943		A0A0D9S1V7
			E	Macaca fascicularis	MACFA10208		A0A8J8XTD3
			E	Macaca mulatta	MACMU10439		F6WYF2
			E	Macaca nemestrina	MACNE06124		A0A2K6CDT1
			E	Mandrillus leucophaeus	MANLE16942		A0A2K6A3K3
			E	Papio anubis	PAPAN05695		A0A096MRE2
			E	Colobus angolensis palliatus	COLAP00341		A0A2K5KAD8
			E	Rhinopithecus bieti	RHIBE26670		A0A2K6KF78
			E	Rhinopithecus roxellana	RHIRO28907		A0A2K6P8D9
			E	Gorilla gorilla gorilla	GORGO02209		G3R0I7

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