Pairwise Orthologs for HUMAN04115

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Gene HUMAN04115 (RO52_HUMAN)

E Homo sapiens | E3 ubiquitin-protein ligase TRIM21 [TRIM21]

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Evidence			Domains	Taxon	Protein ID	Relation type	Cross reference	Domain Architectures
Pair	HOG	OMA	Domains	Taxon	Protein ID	Relation type	Cross reference	Domain Architectures
			E	Anabas testudineus	ANATE25603		A0A3Q1H1Z2
			E	Seriola dumerili	SERDU08141		A0A3B4TJE6
			E	Sparus aurata	SPAAU49221		A0A671WMP8
			E	Cyprinodon variegatus	CYPVA06299		A0A3Q2DD91
			E	Poecilia reticulata	POERE29508		A0A3P9NA68
			E	Oreochromis niloticus	ORENI61925		I3KZT9
			E	Ornithorhynchus anatinus	ORNAN03111		F6VC71
			E	Procavia capensis	PROCA02982		ENSPCAG00000004445
			E	Echinops telfairi	ECHTE02050		ENSETEG00000017931
			E	Ochotona princeps	OCHPR04002		ENSOPRG00000014479
			E	Dipodomys ordii	DIPOR06812		ENSDORG00000007305.2
			E	Fukomys damarensis	FUKDA12759		ENSFDAG00000007764.1
			E	Heterocephalus glaber	HETGA19104		ENSHGLG00100005369.1
			E	Cavia aperea	CAVAP16249		ENSCAPG00000006289.1
			E	Cavia porcellus	CAVPO22089		H0VKV8
			E	Chinchilla lanigera	CHILA03870		A0A8C2YTP0
			E	Octodon degus	OCTDE20194		ENSODEG00000008000.1
			E	Jaculus jaculus	JACJA01888		A0A8C5KUI4
			E	Cricetulus griseus	CRIGR26430		G3ILU9
			E	Mus musculus	MOUSE56728		Q3U7K7
			E	Rattus norvegicus	RATNO16743		D4ACF2
			E	Nannospalax galili	NANGA19236		A0A8C6QDI6
			E	Ictidomys tridecemlineatus	ICTTR04828		ENSSTOG00000004965
			E	Cercocebus atys	CERAT17575		A0A2K5LKX8
			E	Chlorocebus sabaeus	CHLSB00756		A0A0D9QW70

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