Pairwise Orthologs for GADMO13313

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Gene GADMO13313 (A0A8C5FKR0)

E Gadus morhua | Phospholipase A2 receptor 1 [PLA2R1]

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Evidence			Domains	Taxon	Protein ID	Relation type	Cross reference	Domain Architectures
Pair	HOG	OMA	Domains	Taxon	Protein ID	Relation type	Cross reference	Domain Architectures
			E	Scyliorhinus torazame	SCYTO08480		A0A401PBG0
			E	Chiloscyllium punctatum	CHIPU00414		A0A401RV84
			E	Callorhinchus milii	CALMI10021		A0A4W3HS96
			E	Lepisosteus oculatus	LEPOC03189		W5MQ61
			E	Anguilla anguilla	ANGAN12156		XP_035267080
			E	Anabas testudineus	ANATE13920		A0A3Q1IX63
			E	Seriola dumerili	SERDU24733		A0A3B4VDK4
			E	Echeneis naucrates	ECHNA25261		A0A665WQL3
			E	Cynoglossus semilaevis	CYNSE23543		A0A3P8UHD1
			E	Scophthalmus maximus	SCOMX25562		ENSSMAG00000012454.1
			E	Dicentrarchus labrax	DICLA39312		A0A8P4KBD7
			E	Gasterosteus aculeatus	GASAC17243		G3PQY9
			E	Sparus aurata	SPAAU26568		A0A671XU88
			E	Mola mola	MOLML06043		A0A3Q3WZL2
			E	Takifugu rubripes	TAKRU09069		A0A674PBN8
			E	Tetraodon nigroviridis	TETNG11345		H3CVR3
			E	Oryzias javanicus	ORYJA15175		A0A437DH30
			E	Oryzias latipes	ORYLA12238		ENSORLG00000004132
			E	Oryzias melastigma	ORYME02697		A0A3B3C606
			E	Nothobranchius furzeri	NOTFU12302		A0A8C6KVP4
			E	Cyprinodon variegatus	CYPVA04440		A0A3Q2E6P8
			E	Gambusia affinis	GAMAF09331		ENSGAFG00000011699.1
			E	Poecilia formosa	POEFO10303		A0A096LVZ9
			E	Poecilia reticulata	POERE23847		A0A3P9Q8F1
			E	Xiphophorus maculatus	XIPMA27453		M3ZHS3

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