Pairwise Orthologs for FICAL13990

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Gene FICAL13990 (U3JIK9)

E Ficedula albicollis | DNA-(apurinic or apyrimidinic site) lyase [NEIL2]

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Evidence			Domains	Taxon	Protein ID	Relation type	Cross reference	Domain Architectures
Pair	HOG	OMA	Domains	Taxon	Protein ID	Relation type	Cross reference	Domain Architectures
			B	Acidobacterium capsulatum (strain ATCC 51196 / DSM 11244 / BCRC 80197 / JCM 7670 / NBRC 15755 / NCIMB 13165 / 161)	ACIC501629		ACP_1716
			B	Thioalkalivibrio sp. (strain K90mix)	THISK02207		TK90_2263
			E	Branchiostoma floridae	BRAFL14499		A0A9J7L3S1
			E	Branchiostoma lanceolatum	BRALA17165		BL07552
			E	Eptatretus burgeri	EPTBU23329		A0A8C4WX37
			E	Ornithorhynchus anatinus	ORNAN29764		F6Z0I0
			E	Tachyglossus aculeatus	TACAU28921		XP_038627461
			E	Loxodonta africana	LOXAF12081		G3TR02
			E	Echinops telfairi	ECHTE05052		ENSETEG00000014172
			E	Dipodomys ordii	DIPOR16957		A0A1S3FUI4
			E	Fukomys damarensis	FUKDA03633		ENSFDAG00000013145.1
			E	Heterocephalus glaber	HETGA09900		G5AMF5
			E	Cavia aperea	CAVAP00801		ENSCAPG00000013431.1
			E	Cavia porcellus	CAVPO00822		H0V6X8
			E	Chinchilla lanigera	CHILA00809		A0A8C2W0M0
			E	Jaculus jaculus	JACJA23531		A0A8C5L2Q2
			E	Cricetulus griseus	CRIGR04091		A0A8C2LHY4
			E	Mus musculus	MOUSE12664		NEIL2_MOUSE
			E	Rattus norvegicus	RATNO09535		A6K6F8
			E	Nannospalax galili	NANGA09587		A0A8C6WCF9
			E	Cercocebus atys	CERAT26927		A0A2K5MPV9
			E	Chlorocebus sabaeus	CHLSB16900		A0A0D9RWK6
			E	Macaca mulatta	MACMU43221		F6QQ86
			E	Macaca nemestrina	MACNE36005		A0A2K6DY59
			E	Mandrillus leucophaeus	MANLE12463		A0A2K5Y290

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