Pairwise Orthologs for HUMAN92227

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Gene HUMAN92227 (SHH_HUMAN)

E Homo sapiens | Sonic hedgehog protein [SHH]

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Evidence			Domains	Taxon	Protein ID	Relation type	Cross reference	Domain Architectures
Pair	HOG	OMA	Domains	Taxon	Protein ID	Relation type	Cross reference	Domain Architectures
			E	Branchiostoma floridae	BRAFL36290		A0A9J7HG86
			E	Petromyzon marinus	PETMA05211		S4RH40
			E	Scyliorhinus torazame	SCYTO03013		A0A401PLE8
			E	Lepisosteus oculatus	LEPOC17615		W5N409
			E	Anguilla anguilla	ANGAN16933		XP_035268960
			E	Anabas testudineus	ANATE01375		A0A7N6BWH4
			E	Seriola dumerili	SERDU17724		A0A3B4TU04
			E	Echeneis naucrates	ECHNA38972		A0A665X5N5
			E	Cynoglossus semilaevis	CYNSE22024		A0A3P8UMD8
			E	Scophthalmus maximus	SCOMX18100		A0A6A4SBH0
			E	Dicentrarchus labrax	DICLA19095		E6ZJ03
			E	Gasterosteus aculeatus	GASAC02828		G3NIG1
			E	Sparus aurata	SPAAU46623		A0A671VYN6
			E	Mola mola	MOLML22044		A0A3Q3VVL2
			E	Takifugu rubripes	TAKRU02375		Q8AXT0
			E	Tetraodon nigroviridis	TETNG11836		H3D5G4
			E	Oryzias javanicus	ORYJA24988		A0A3S2NT73
			E	Oryzias latipes	ORYLA09194		A0A3B3H8Y2
			E	Oryzias melastigma	ORYME20094		A0A3B3BD40
			E	Nothobranchius furzeri	NOTFU13019		A0A1A8A852
			E	Kryptolebias marmoratus	KRYMA03787		A0A3Q3AKV8
			E	Cyprinodon variegatus	CYPVA09308		A0A3Q2DW64
			E	Gambusia affinis	GAMAF07848		ENSGAFG00000003288.1
			E	Poecilia formosa	POEFO07709		A0A087YBX2
			E	Poecilia reticulata	POERE17948		A0A3P9NUR4

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