Pairwise Orthologs for HUMAN16783

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Gene HUMAN16783 (CCNA1_HUMAN)

E Homo sapiens | Cyclin-A1 [CCNA1]

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Evidence			Domains	Taxon	Protein ID	Relation type	Cross reference	Domain Architectures
Pair	HOG	OMA	Domains	Taxon	Protein ID	Relation type	Cross reference	Domain Architectures
			E	Giardia intestinalis (strain ATCC 50581 / GS clone H7)	GIAIB02394		C6LUN3
			E	Ajellomyces capsulatus (strain H143)	AJECH06098		C6HJ64
			E	Ajellomyces capsulatus (strain H88)	AJEC800442		F0UBN2
			E	Lachancea thermotolerans (strain ATCC 56472 / CBS 6340 / NRRL Y-8284)	LACTC01612		C5E229
			E	Scyliorhinus torazame	SCYTO15291		A0A401PTS2
			E	Chiloscyllium punctatum	CHIPU08325		A0A401SHT8
			E	Anguilla anguilla	ANGAN34734		XP_035288310
			E	Poecilia formosa	POEFO00757		A0A087YCP4
			E	Latimeria chalumnae	LATCH03352		H3AFG8
			E	Ornithorhynchus anatinus	ORNAN13709		F7B8E5
			E	Tachyglossus aculeatus	TACAU20918		XP_038617500
			E	Loxodonta africana	LOXAF15065		G3SMW8
			E	Echinops telfairi	ECHTE06720		ENSETEG00000004901
			E	Oryctolagus cuniculus	RABIT14145		G1TAE6
			E	Dipodomys ordii	DIPOR17521		A0A1S3GDZ6
			E	Fukomys damarensis	FUKDA03469		ENSFDAG00000005770.1
			E	Heterocephalus glaber	HETGA11193		ENSHGLG00100001535.1
			E	Cavia aperea	CAVAP02887		ENSCAPG00000013313.1
			E	Cavia porcellus	CAVPO04024		H0UYY2
			E	Chinchilla lanigera	CHILA09186		A0A8C2V2S1
			E	Octodon degus	OCTDE08193		A0A6P6EEY2
			E	Cricetulus griseus	CRIGR10683		ENSCGRG00000009234.1
			E	Mus musculus	MOUSE37852		CCNA1_MOUSE
			E	Rattus norvegicus	RATNO23541		CCNA1_RAT
			E	Nannospalax galili	NANGA18325		A0A8C6WB66

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