Pairwise Orthologs for HUMAN31001

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Gene HUMAN31001 (ACHE_HUMAN)

E Homo sapiens | Acetylcholine receptor subunit epsilon [CHRNE]

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Evidence			Domains	Taxon	Protein ID	Relation type	Cross reference	Domain Architectures
Pair	HOG	OMA	Domains	Taxon	Protein ID	Relation type	Cross reference	Domain Architectures
			E	Branchiostoma floridae	BRAFL06027		A0A9J7MGR5
			E	Scyliorhinus torazame	SCYTO08009		A0A401P3K7
			E	Lepisosteus oculatus	LEPOC07621		W5N7U6
			E	Anguilla anguilla	ANGAN33371		XP_035289952
			E	Anabas testudineus	ANATE06364		A0A7N5ZYK9
			E	Seriola dumerili	SERDU12906		A0A3B4UD81
			E	Echeneis naucrates	ECHNA44802		A0A665WGW7
			E	Cynoglossus semilaevis	CYNSE15457		A0A3P8WTB0
			E	Scophthalmus maximus	SCOMX24085		ENSSMAG00000015235.1
			E	Dicentrarchus labrax	DICLA10295		XP_051258190
			E	Gasterosteus aculeatus	GASAC18682		G3QAN9
			E	Sparus aurata	SPAAU20663		A0A671WQQ2
			E	Mola mola	MOLML09568		A0A3Q4BMD3
			E	Takifugu rubripes	TAKRU13567		A0A674P4C8
			E	Tetraodon nigroviridis	TETNG12271		Q4S8X9
			E	Oryzias javanicus	ORYJA14046		A0A437CMR7
			E	Oryzias latipes	ORYLA04231		ENSORLG00000008035
			E	Oryzias melastigma	ORYME12160		A0A3B3CZB3
			E	Nothobranchius furzeri	NOTFU18156		A0A8C6PQP7
			E	Kryptolebias marmoratus	KRYMA25120		A0A3Q3AP05
			E	Cyprinodon variegatus	CYPVA25584		A0A3Q2EEN1
			E	Gambusia affinis	GAMAF04762		ENSGAFG00000005326.1
			E	Poecilia formosa	POEFO12189		A0A096M916
			E	Poecilia reticulata	POERE07753		A0A3P9QH51
			E	Xiphophorus maculatus	XIPMA03204		M4ABR9

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