Pairwise Orthologs for HUMAN42031

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Gene HUMAN42031 (CRTC1_HUMAN)

E Homo sapiens | CREB-regulated transcription coactivator 1 [CRTC1]

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Evidence			Domains	Taxon	Protein ID	Relation type	Cross reference	Domain Architectures
Pair	HOG	OMA	Domains	Taxon	Protein ID	Relation type	Cross reference	Domain Architectures
			B	Variovorax paradoxus (strain S110)	VARPS00208		Vapar_0208
			E	Trichomonas vaginalis G3	TRIVA35674		A2G409
			E	Scyliorhinus torazame	SCYTO15873		A0A401Q406
			E	Chiloscyllium punctatum	CHIPU15869		A0A401T4C5
			E	Lepisosteus oculatus	LEPOC06416		W5LZR5
			E	Anguilla anguilla	ANGAN15659		XP_035267841
			E	Anabas testudineus	ANATE17570		A0A3Q1IHT2
			E	Echeneis naucrates	ECHNA36378		A0A665VBT4
			E	Cynoglossus semilaevis	CYNSE20193		A0A3P8WNP5
			E	Scophthalmus maximus	SCOMX03971		ENSSMAG00000021199.1
			E	Dicentrarchus labrax	DICLA36853		A0A8P4KN09
			E	Sparus aurata	SPAAU68056		A0A671V760
			E	Takifugu rubripes	TAKRU28899		H2T5X7
			E	Oryzias latipes	ORYLA13148		ENSORLG00000007878
			E	Kryptolebias marmoratus	KRYMA08538		A0A3Q3F4F2
			E	Cyprinodon variegatus	CYPVA25400		A0A3Q2DVR4
			E	Poecilia formosa	POEFO02351		A0A096ME72
			E	Astatotilapia calliptera	ASTCA11513		A0A3P8R2W2
			E	Neolamprologus brichardi	NEOBR11982		A0A3Q4G7M6
			E	Oreochromis aureus	OREAU41747		A0A668UTW9
			E	Oreochromis niloticus	ORENI18420		I3K462
			E	Amphilophus citrinellus	AMPCI23918		A0A3Q0R9L7
			E	Amphiprion ocellaris	AMPOC14155		A0A3Q1B350
			E	Hippocampus comes	HIPCM05059		A0A3Q2XQ40
			E	Esox lucius	ESOLU22079		A0A3P8ZZH5

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