Pairwise Orthologs for HUMAN28955

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Gene HUMAN28955 (TRADD_HUMAN)

E Homo sapiens | Tumor necrosis factor receptor type 1-associated D [TRADD]

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Evidence			Domains	Taxon	Protein ID	Relation type	Cross reference	Domain Architectures
Pair	HOG	OMA	Domains	Taxon	Protein ID	Relation type	Cross reference	Domain Architectures
			E	Petromyzon marinus	PETMA01725		S4RMK5
			E	Scyliorhinus torazame	SCYTO08086		A0A401P4R0
			E	Chiloscyllium punctatum	CHIPU04846		A0A401S7U9
			E	Callorhinchus milii	CALMI33512		A0A4W3HAS8
			E	Lepisosteus oculatus	LEPOC09365		W5MMP9
			E	Anguilla anguilla	ANGAN19221		XP_035273932
			E	Anabas testudineus	ANATE13602		A0A7N6C239
			E	Seriola dumerili	SERDU05579		A0A3B4V6M6
			E	Echeneis naucrates	ECHNA23496		A0A665T8K4
			E	Cynoglossus semilaevis	CYNSE23636		A0A3P8UKA5
			E	Scophthalmus maximus	SCOMX26005		A0A2U9BDA7
			E	Dicentrarchus labrax	DICLA39769		XP_051235300
			E	Gasterosteus aculeatus	GASAC17444		G3PTL1
			E	Sparus aurata	SPAAU27129		A0A2R2YUP0
			E	Mola mola	MOLML05789		A0A3Q4BLW0
			E	Takifugu rubripes	TAKRU07476		H2VA24
			E	Tetraodon nigroviridis	TETNG11167		H3C6S5
			E	Oryzias javanicus	ORYJA16293		ENSOJAG00000024004.1
			E	Oryzias latipes	ORYLA12433		ENSORLG00000008824
			E	Oryzias melastigma	ORYME02355		A0A3B3CXX6
			E	Nothobranchius furzeri	NOTFU11840		A0A1A7ZEI4
			E	Kryptolebias marmoratus	KRYMA02964		A0A3Q3A5Q4
			E	Cyprinodon variegatus	CYPVA30077		A0A3Q2GCF0
			E	Gambusia affinis	GAMAF18007		ENSGAFG00000017477.1
			E	Poecilia formosa	POEFO19235		A0A087X697

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