Pairwise Orthologs for HUMAN57336

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Gene HUMAN57336 (MMP9_HUMAN)

E Homo sapiens | Matrix metalloproteinase-9 [MMP9]

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Evidence			Domains	Taxon	Protein ID	Relation type	Cross reference	Domain Architectures
Pair	HOG	OMA	Domains	Taxon	Protein ID	Relation type	Cross reference	Domain Architectures
			E	Scyliorhinus torazame	SCYTO00603		A0A401P060
			E	Chiloscyllium punctatum	CHIPU03349		A0A401S3M4
			E	Callorhinchus milii	CALMI05117		A0A4W3J2X1
			E	Lepisosteus oculatus	LEPOC06303		W5MIU6
			E	Anguilla anguilla	ANGAN40809		XP_035239525
			E	Anabas testudineus	ANATE20443		ENSATEG00000020195.1
			E	Seriola dumerili	SERDU11222		A0A3B4U7K2
			E	Echeneis naucrates	ECHNA01759		A0A665UZC6
			E	Cynoglossus semilaevis	CYNSE01381		A0A3P8UH76
			E	Scophthalmus maximus	SCOMX02337		A0A8D3BAU2
			E	Dicentrarchus labrax	DICLA32484		XP_051280777
			E	Gasterosteus aculeatus	GASAC11612		G3NZ98
			E	Sparus aurata	SPAAU53486		A0A671YV44
			E	Mola mola	MOLML20993		A0A3Q4AFX9
			E	Takifugu rubripes	TAKRU36123		H2RPD1
			E	Tetraodon nigroviridis	TETNG13424		H3DCD6
			E	Oryzias javanicus	ORYJA18646		ENSOJAG00000010824.1
			E	Oryzias latipes	ORYLA15685		ENSORLG00000006340
			E	Oryzias melastigma	ORYME05265		A0A3B3CLP7
			E	Nothobranchius furzeri	NOTFU23707		A0A9D2XWQ8
			E	Kryptolebias marmoratus	KRYMA11633		A0A3Q3B4I4
			E	Cyprinodon variegatus	CYPVA09990		A0A3Q2E4E4
			E	Gambusia affinis	GAMAF18080		A0A315W7Y9
			E	Xiphophorus maculatus	XIPMA15756		M4A6X2
			E	Salarias fasciatus	SALFA40710		A0A672JCE9

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