Pairwise Orthologs for DESAA00831

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Gene DESAA00831 (Dalk_0842)

B Desulfatibacillum alkenivorans (strain AK-01)

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Evidence			Domains	Taxon	Protein ID	Relation type	Cross reference	Domain Architectures
Pair	HOG	OMA	Domains	Taxon	Protein ID	Relation type	Cross reference	Domain Architectures
			B	Armatimonadetes bacterium AS09scLD_344	U01AM03876		GX785_07435
			B	Halobacteriovorax marinus (strain ATCC BAA-682 / DSM 15412 / SJ)	HALMS02944		WP_014245656
			B	Desulfatibacillum aliphaticivorans	DESAL00837		ACL02547
			B	Geobacter sulfurreducens (strain ATCC 51573 / DSM 12127 / PCA)	GEOSL02466		GSU2508
			B	Geobacter sulfurreducens (strain DL-1 / KN400)	GEOSK02364		KN400_2454
			B	Candidatus Aureabacteria bacterium Zod_Metabat.1054	UC03202579		JW774_09135
			B	Candidatus Aureabacteria bacterium Zod_Metabat.1054	UC03202186		JW774_07445
			B	Candidatus Aureabacteria bacterium Zod_Metabat.1054	UC03200854		JW774_13535
			B	Luteitalea pratensis	LUTPR00362		LuPra_00370
			B	Geobacter sp. (strain M18)	GEOS802426		GM18_2487
			B	candidate division WWE3 bacterium RAAC2_WWE3_1	UC18400051		P147_WWE3C00001G0051
			B	Deltaproteobacteria bacterium NC_groundwater_736_Ag_S-0.65um_62_10	U04DE00067		HYY84_11410
			B	Deltaproteobacteria bacterium NC_groundwater_736_Ag_S-0.65um_62_10	U04DE00390		HYY84_13960
			B	Deltaproteobacteria bacterium NC_groundwater_736_Ag_S-0.65um_62_10	U04DE01739		HYY84_09540
			B	Deltaproteobacteria bacterium NC_groundwater_1655_Pr3_B-0.1um_70_22	U11DE01771		HY903_13955
			B	Deltaproteobacteria bacterium NC_groundwater_1655_Pr3_B-0.1um_70_22	U11DE00931		HY903_09900
			B	Candidatus Sumerlaea chitinivorans BY40	UC13700208		BRCON_0208
			B	Candidatus Sumerlaea chitinivorans BY40	UC13700209		BRCON_0209
			B	Candidatus Sumerlaea chitinivorans BY40	UC13702788		BRCON_2823
			B	Candidatus Sumerlaea chitinivorans BY40	UC13701619		BRCON_1619

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