Pairwise Orthologs for DANRE40876

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Gene DANRE40876 (C99L2_DANRE)

E Danio rerio | CD99 antigen-like protein 2 [cd99l2]

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This entry is not the isoform used for orthologs inferences, orthologs below are inferred using the entry isoform DANRE40874.

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Evidence			Domains	Taxon	Protein ID	Relation type	Cross reference	Domain Architectures
Pair	HOG	OMA	Domains	Taxon	Protein ID	Relation type	Cross reference	Domain Architectures
			E	Chiloscyllium punctatum	CHIPU04182		A0A401S5Y8
			E	Lepisosteus oculatus	LEPOC15897		W5NB34
			E	Seriola dumerili	SERDU21885		A0A3B4TMW6
			E	Scophthalmus maximus	SCOMX15238		ENSSMAG00000008701.1
			E	Dicentrarchus labrax	DICLA34932		A0A8P4KLI4
			E	Gasterosteus aculeatus	GASAC02061		G3N6P2
			E	Sparus aurata	SPAAU08115		A0A671X844
			E	Oryzias melastigma	ORYME20489		A0A3B3BB11
			E	Poecilia reticulata	POERE13029		A0A3P9N2Z1
			E	Astatotilapia calliptera	ASTCA27313		A0A3P8Q378
			E	Amphiprion ocellaris	AMPOC09495		A0A3Q1B3S5
			E	Esox lucius	ESOLU69312		A0A3P8Y0Y4
			E	Salmo trutta	SALTR88781		A0A673VNC4
			E	Astyanax mexicanus	ASTMX05641		A0A8B9KI38
			E	Pygocentrus nattereri	PYGNA18563		A0A3B4CNC9
			E	Electrophorus electricus	ELEEL27222		A0A4W4FJ47
			E	Sinocyclocheilus grahami	SINGR13822		A0A672QQ29
			E	Latimeria chalumnae	LATCH16454		H3B4E9
			E	Ornithorhynchus anatinus	ORNAN23675		F6T3F0
			E	Oryctolagus cuniculus	RABIT14999		ENSOCUG00000016710.3
			E	Myotis lucifugus	MYOLU04282		G1PH08
			E	Crocodylus porosus	CROPO21704		A0A7M4EEW8
			E	Falco tinnunculus	FALTI10340		A0A8C4U2M2
			E	Gallus gallus	CHICK21904		XP_015134137
			E	Phasianus colchicus	PHACC17982		A0A669Q5Q5

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