Pairwise Orthologs for DANRE29000

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Gene DANRE29000 (B0S7C3)

E Danio rerio | Nucleolar transcription factor 1 isoform X1 [ubtfl]

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This entry is not the isoform used for orthologs inferences, orthologs below are inferred using the entry isoform DANRE28997.

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Evidence			Domains	Taxon	Protein ID	Relation type	Cross reference	Domain Architectures
Pair	HOG	OMA	Domains	Taxon	Protein ID	Relation type	Cross reference	Domain Architectures
			E	Monosiga brevicollis	MONBE00546		A9UT61
			E	Petromyzon marinus	PETMA00950		S4RXC0
			E	Chiloscyllium punctatum	CHIPU15689		A0A401T3V4
			E	Callorhinchus milii	CALMI42986		V9KEU9
			E	Lepisosteus oculatus	LEPOC17415		W5MVX2
			E	Anguilla anguilla	ANGAN29076		XP_035285826
			E	Anabas testudineus	ANATE00087		A0A7N6FHI8
			E	Seriola dumerili	SERDU31100		A0A3B4TTL5
			E	Echeneis naucrates	ECHNA33497		A0A665VBI5
			E	Cynoglossus semilaevis	CYNSE00459		A0A3P8WBC2
			E	Dicentrarchus labrax	DICLA53094		A0A8P4K6U6
			E	Gasterosteus aculeatus	GASAC01375		G3N9H7
			E	Sparus aurata	SPAAU38889		A0A671Z4Z0
			E	Mola mola	MOLML28441		A0A3Q3XJL3
			E	Takifugu rubripes	TAKRU31896		H2TGZ3
			E	Tetraodon nigroviridis	TETNG17648		H3CBL6
			E	Oryzias javanicus	ORYJA28448		ENSOJAG00000019772.1
			E	Oryzias melastigma	ORYME31442		A0A3B3CQJ1
			E	Nothobranchius furzeri	NOTFU14177		A0A1A8VAC2
			E	Kryptolebias marmoratus	KRYMA28924		A0A3Q3AQD6
			E	Cyprinodon variegatus	CYPVA31723		A0A3Q2FY05
			E	Gambusia affinis	GAMAF31884		ENSGAFG00000004508.1
			E	Poecilia formosa	POEFO22025		A0A087XYI2
			E	Poecilia reticulata	POERE00804		A0A3P9MXC5
			E	Xiphophorus maculatus	XIPMA31404		A0A3B5QD92

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