Pairwise Orthologs for DANRE27949

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Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Gene DANRE27949 (F1R3H5)

E Danio rerio | Protein SPT2 homolog [spty2d1]

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Evidence			Domains	Taxon	Protein ID	Relation type	Cross reference	Domain Architectures
Pair	HOG	OMA	Domains	Taxon	Protein ID	Relation type	Cross reference	Domain Architectures
			E	Cavenderia fasciculata (strain SH3)	CAVFA01493		F4PV50
			E	Dictyostelium discoideum	DICDI02512		Q559P7
			E	Trametes pubescens	TRAPU03397		A0A1M2VAZ4
			E	Spizellomyces punctatus	SPIPN02166		SPPG_02284
			E	Spizellomyces punctatus (strain DAOM BR117)	SPIPD02506		A0A0L0HQJ6
			E	Mucor circinelloides	MUCCI01287		Mucci1.fgeneshMC_pg.
			E	Mucor circinelloides f. circinelloides (strain 1006PhL)	MUCC101650		S2JMB4
			E	Syncephalastrum racemosum	SYNRA03947		A0A1X2HHW6
			E	Asterias rubens	ASTRU20231		XP_033645580
			E	Dermacentor andersoni	DERAN20978		XP_050041345
			E	Dermacentor silvarum	DERSI16410		XP_037570220
			E	Camponotus floridanus	CAMFO04380		E2A8Q3
			E	Capitella teleta	CAPTE23078		R7VB03
			E	Capitella sp. 1	CAPI110894		fgenesh1_pg.C_scaffo
			E	Amphimedon queenslandica	AMPQE14409		Aqu1.215485
			E	Ginkgo biloba	GINBI02265		evm.TU.chr1.2265
			E	Oryza glaberrima	ORYGL06188		I1QZG5
			E	Oryza longistaminata	ORYLO09413		KN540469.1_FG003
			E	Oryza nivara	ORYNI08700		A0A0E0J107
			E	Oryza punctata	ORYPU07250		A0A0E0MET2
			E	Oryza rufipogon	ORYRU08410		A0A0E0R769
			E	Oryza sativa subsp. indica	ORYSI08413		B8BK53
			E	Oryza sativa subsp. japonica	ORYSJ07649		A0A0P0Y1J1
			E	Aegilops tauschii subsp. strangulata	AEGTS43249		XP_020147819
			E	Miscanthus sinensis	MISSI54787		Misin11G170300.v7.1

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