Pairwise Orthologs for DANRE04031

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Gene DANRE04031 (ENSDARG00000059903.7)

E Danio rerio

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Evidence			Domains	Taxon	Protein ID	Relation type	Cross reference	Domain Architectures
Pair	HOG	OMA	Domains	Taxon	Protein ID	Relation type	Cross reference	Domain Architectures
			B	Gemmatimonadetes bacterium ARS67	U02GE00668		CME06_03380
			E	Guillardia theta	GUITH13790		EKX44171
			E	Guillardia theta (strain CCMP2712)	GUITC11448		L1J6M3
			E	Diacronema lutheri	DIALT00678		A0A8J6CIV9
			E	Chiloscyllium punctatum	CHIPU06413		A0A401SCA3
			E	Callorhinchus milii	CALMI07766		A0A4W3GU23
			E	Lepisosteus oculatus	LEPOC01767		W5MXY8
			E	Anguilla anguilla	ANGAN08411		XP_035257349
			E	Anabas testudineus	ANATE32281		ENSATEG00000000164.1
			E	Seriola dumerili	SERDU05387		A0A3B4U6Z6
			E	Echeneis naucrates	ECHNA47077		A0A665WWS4
			E	Cynoglossus semilaevis	CYNSE28246		A0A3P8UNE9
			E	Scophthalmus maximus	SCOMX11951		ENSSMAG00000002973.1
			E	Dicentrarchus labrax	DICLA24418		A0A8C4EKW5
			E	Gasterosteus aculeatus	GASAC01986		G3NCR9
			E	Sparus aurata	SPAAU30381		A0A671V5T8
			E	Mola mola	MOLML22903		A0A3Q4BY72
			E	Takifugu rubripes	TAKRU26055		H2V4E5
			E	Tetraodon nigroviridis	TETNG07951		H3CN23
			E	Oryzias javanicus	ORYJA11381		A0A3S2M4H6
			E	Oryzias melastigma	ORYME33857		A0A3B3C3D4
			E	Nothobranchius furzeri	NOTFU01865		A0A1A8B442
			E	Kryptolebias marmoratus	KRYMA10404		A0A3Q3EHB8
			E	Cyprinodon variegatus	CYPVA20200		A0A3Q2DAE4
			E	Gambusia affinis	GAMAF06966		ENSGAFG00000014526.1

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