Pairwise Orthologs for DANRE02130

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Gene DANRE02130 (ENSDARG00000045298.7)

E Danio rerio

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This entry is not the isoform used for orthologs inferences, orthologs below are inferred using the entry isoform DANRE02129.

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Evidence			Domains	Taxon	Protein ID	Relation type	Cross reference	Domain Architectures
Pair	HOG	OMA	Domains	Taxon	Protein ID	Relation type	Cross reference	Domain Architectures
			A	Methanosaeta harundinacea (strain 6Ac)	METH600323		WP_014585906
			B	Xylanimonas cellulosilytica (strain DSM 15894 / CECT 5975 / LMG 20990 / XIL07)	XYLCX02398		WP_012879181
			B	Frankia alni (strain ACN14a)	FRAAA01267		FRAAL1308
			B	Frankia sp. (strain EAN1pec)	FRASN00167		Franean1_0171
			B	Blastococcus saxobsidens (strain DD2)	BLASD00186		BLASA_0215
			B	Micromonospora maris (strain DSM 45365 / JCM 31040 / NBRC 109089 / NRRL B-24793 / AB-18-032)	MICM105172		A0A9X0I3T3
			B	Mycobacteroides abscessus (strain ATCC 19977 / DSM 44196 / CIP 104536 / JCM 13569 / NCTC 13031 / TMC 1543)	MYCA900858		WP_005083283
			B	Mycolicibacterium paratuberculosis (strain ATCC BAA-968 / K-10)	MYCPA02525		MAP_2552
			B	Mycobacterium sp. (strain KMS)	MYCSK02968		Mkms_3041
			B	Mycobacterium canettii (strain CIPT 140010059)	MYCCP00862		WP_014000472
			B	Nocardia cyriacigeorgica (strain GUH-2)	NOCCG01337		WP_014349632
			B	Actinosynnema mirum (strain ATCC 29888 / DSM 43827 / JCM 3225 / NBRC 14064 / NCIMB 13271 / NRRL B-12336 / IMRU 3971 / 101)	ACTMD06606		Amir_6789
			B	Saccharopolyspora erythraea (strain ATCC 11635 / DSM 40517 / JCM 4748 / NBRC 13426 / NCIMB 8594 / NRRL 2338)	SACEN02194		WP_011873612
			B	Kribbella flavida (strain DSM 17836 / JCM 10339 / NBRC 14399)	KRIFD02615		Kfla_2683
			B	Catenulispora acidiphila (strain DSM 44928 / JCM 14897 / NBRC 102108 / NRRL B-24433 / ID139908)	CATAD06686		Caci_6806
			B	Streptomyces avermitilis (strain ATCC 31267 / DSM 46492 / JCM 5070 / NBRC 14893 / NCIMB 12804 / NRRL 8165 / MA-4680)	STRAW04869		A0A4D4M0X3
			B	Streptomyces collinus (strain DSM 40733 / Tue 365)	STRC301062		AGS67797
			B	Streptomyces pratensis (strain ATCC 33331 / IAF-45CD)	STRFA02524		Sfla_2586
			B	Streptomyces scabiei (strain 87.22)	STRSW08221		SCAB_85541
			B	Streptomyces sp. (strain SirexAA-E / ActE)	STREK05035		AEN13001
			B	Nocardiopsis dassonvillei (strain ATCC 23218 / DSM 43111 / CIP 107115 / JCM 7437 / KCTC 9190 / NBRC 14626 / NCTC 10488 / NRRL B-5397 / IMRU 509)	NOCDD04547		WP_013155607
			B	Thermobifida fusca (strain YX)	THEFY00698		Tfu_0700
			B	Chlorobi bacterium Kalu_18-Q3-R12-55_MAXAC.169	UC05901053		IPM61_05365
			B	Candidatus Schekmanbacteria bacterium NC_groundwater_415_Ag_B-0.1um_66_15	UC07805601		HYV63_18160
			B	Deinococcus maricopensis (strain DSM 21211 / LMG 22137 / NRRL B-23946 / LB-34)	DEIML02241		WP_013557412

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