Pairwise Orthologs for COFCA04055

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Gene COFCA04055 (A0A068UCI9)

E Coffea canephora | Protein kinase domain-containing protein

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Evidence			Domains	Taxon	Protein ID	Relation type	Cross reference	Domain Architectures
Pair	HOG	OMA	Domains	Taxon	Protein ID	Relation type	Cross reference	Domain Architectures
			E	Amborella trichopoda	AMBTC13103		U5CYJ2
			E	Oryza nivara	ORYNI12376		A0A0E0G190
			E	Oryza rufipogon	ORYRU36446		A0A0E0QNS8
			E	Eragrostis tef	ERATE24565		maker-scaffold4637-s
			E	Kalanchoe fedtschenkoi	KALFE26459		A0A7N0ZWW7
			E	Nicotiana tabacum	TOBAC07235		A0A1S4BS78
			E	Lotus japonicus	LOTJA09983		Lj0g3v0286449
			E	Cannabis sativa	CANSA30795		A0A803NY44
			E	Prunus persica	PRUPE06223		EMJ18601
			E	Arabis alpina	ARAAL19589		A0A087GCA2
			E	Vitis vinifera	VITVI03469		CBI36001
			E	Zostera marina	ZOSMR11949		A0A0K9PDY9
			E	Zostera marina	ZOSMR15484		A0A0K9NYN3
			E	Oryza brachyantha	ORYBR21600		J3M917
			E	Oryza brachyantha	ORYBR21601		J3M918
			E	Oryza brachyantha	ORYBR21602		J3M919
			E	Oryza brachyantha	ORYBR29123		J3MVY9
			E	Oryza brachyantha	ORYBR29127		J3MVZ3
			E	Oryza glaberrima	ORYGL20516		I1PXF5
			E	Oryza glaberrima	ORYGL20517		I1PXF6
			E	Oryza glaberrima	ORYGL20518		I1PXF7
			E	Oryza glaberrima	ORYGL20519		I1PXF8
			E	Oryza glaberrima	ORYGL27450		I1QMG2
			E	Oryza longistaminata	ORYLO06159		KN541516.1_FG001
			E	Oryza longistaminata	ORYLO19593		KN539123.1_FG015

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