Pairwise Orthologs for CIOIN05215

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Gene CIOIN05215 (F6XP52)

E Ciona intestinalis | beta-galactoside alpha-2,3-sialyltransferase [siat4]

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Evidence			Domains	Taxon	Protein ID	Relation type	Cross reference	Domain Architectures
Pair	HOG	OMA	Domains	Taxon	Protein ID	Relation type	Cross reference	Domain Architectures
			E	Petromyzon marinus	PETMA00522		S4R9J6
			E	Chiloscyllium punctatum	CHIPU17971		A0A401RLC6
			E	Lepisosteus oculatus	LEPOC06277		W5MHF3
			E	Scophthalmus maximus	SCOMX26880		A0A8D2ZTN0
			E	Dicentrarchus labrax	DICLA23845		A0A8P4GHT6
			E	Sparus aurata	SPAAU44015		A0A671VEK3
			E	Tetraodon nigroviridis	TETNG18097		H3CEF0
			E	Oryzias javanicus	ORYJA32320		A0A3S2PF58
			E	Oryzias latipes	ORYLA15178		ENSORLG00000013421
			E	Kryptolebias marmoratus	KRYMA21253		A0A3Q3BCS4
			E	Gambusia affinis	GAMAF00951		ENSGAFG00000015271.1
			E	Poecilia formosa	POEFO14979		A0A096MEX1
			E	Poecilia reticulata	POERE29303		A0A3P9Q4P6
			E	Astatotilapia calliptera	ASTCA36117		A0A3P8QU91
			E	Neolamprologus brichardi	NEOBR17340		A0A3Q4GZJ2
			E	Oreochromis aureus	OREAU17950		A0A668U714
			E	Oreochromis niloticus	ORENI68226		I3JYZ1
			E	Hippocampus comes	HIPCM08088		A0A3Q2Y8R0
			E	Ornithorhynchus anatinus	ORNAN02801		A0A6I8PCX3
			E	Tachyglossus aculeatus	TACAU13494		XP_038609367
			E	Loxodonta africana	LOXAF07452		ENSLAFG00000006664
			E	Echinops telfairi	ECHTE05880		ENSETEG00000017552
			E	Oryctolagus cuniculus	RABIT11062		G1SL31
			E	Ochotona princeps	OCHPR07704		ENSOPRG00000003481
			E	Fukomys damarensis	FUKDA10552		ENSFDAG00000002055.1

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