Pairwise Orthologs for CAPHI23066

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Gene CAPHI23066 (A0A452G8Y3)

E Capra hircus | Polypeptide N-acetylgalactosaminyltransferase [GALNT11]

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Evidence			Domains	Taxon	Protein ID	Relation type	Cross reference	Domain Architectures
Pair	HOG	OMA	Domains	Taxon	Protein ID	Relation type	Cross reference	Domain Architectures
			E	Branchiostoma floridae	BRAFL24897		A0A9J7LS98
			E	Branchiostoma lanceolatum	BRALA14449		BL02504
			E	Petromyzon marinus	PETMA05267		S4RAU6
			E	Scyliorhinus torazame	SCYTO10081		A0A401P249
			E	Lepisosteus oculatus	LEPOC17628		W5N4C9
			E	Anguilla anguilla	ANGAN16671		XP_035270520
			E	Anabas testudineus	ANATE00918		A0A3Q1II09
			E	Seriola dumerili	SERDU31350		A0A3B4U6I4
			E	Echeneis naucrates	ECHNA37596		A0A665U1Z8
			E	Cynoglossus semilaevis	CYNSE21800		A0A3P8WWA1
			E	Scophthalmus maximus	SCOMX18951		A0A8D3AH38
			E	Dicentrarchus labrax	DICLA43643		A0A8P4KQ12
			E	Gasterosteus aculeatus	GASAC02983		G3NPZ2
			E	Mola mola	MOLML27192		A0A3Q3X3F1
			E	Takifugu rubripes	TAKRU01653		A0A674MQW2
			E	Tetraodon nigroviridis	TETNG10648		H3D7P5
			E	Oryzias javanicus	ORYJA06276		A0A3S2MRK0
			E	Oryzias melastigma	ORYME34358		A0A3B3DPB1
			E	Nothobranchius furzeri	NOTFU31393		A0A1A8V5G1
			E	Kryptolebias marmoratus	KRYMA28964		A0A3Q3AIN5
			E	Cyprinodon variegatus	CYPVA31854		A0A3Q2E5P0
			E	Gambusia affinis	GAMAF30903		ENSGAFG00000003158.1
			E	Poecilia formosa	POEFO25022		A0A087X4A7
			E	Poecilia reticulata	POERE00452		A0A3P9P1P2
			E	Xiphophorus maculatus	XIPMA18842		M4A4H1

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