Pairwise Orthologs for CALMI43066

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Gene CALMI43066 (V9KIY3)

E Callorhinchus milii | ADP-ribosylation factor [ARF4]

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Evidence			Domains	Taxon	Protein ID	Relation type	Cross reference	Domain Architectures
Pair	HOG	OMA	Domains	Taxon	Protein ID	Relation type	Cross reference	Domain Architectures
			E	Leishmania braziliensis	LEIBR02350		A4HJL1
			E	Vavraia culicis (isolate floridensis)	VAVCU00353		L2GWR2
			E	Petromyzon marinus	PETMA10047		S4RLQ2
			E	Anguilla anguilla	ANGAN45059		A0A9D3LRX9
			E	Amphiprion percula	AMPPE32017		A0A3P8RYM8
			E	Oryctolagus cuniculus	RABIT12948		A0A5F9CMJ6
			E	Heterocephalus glaber	HETGA25394		G5BE69
			E	Cavia porcellus	CAVPO00507		A0A286XK82
			E	Mus musculus	MOUSE12517		ARF4_MOUSE
			E	Rattus norvegicus	RATNO11653		ARF4_RAT
			E	Ictidomys tridecemlineatus	ICTTR03668		A0A287CZ52
			E	Cercocebus atys	CERAT02103		A0A2K5NZ70
			E	Chlorocebus sabaeus	CHLSB10466		A0A0D9RIL8
			E	Macaca nemestrina	MACNE24728		A0A2K6CEA2
			E	Mandrillus leucophaeus	MANLE03469		A0A2K5ZKH0
			E	Papio anubis	PAPAN24936		A0A096NQ76
			E	Colobus angolensis palliatus	COLAP04305		A0A2K5INE3
			E	Rhinopithecus bieti	RHIBE05412		A0A2K6LBS0
			E	Rhinopithecus roxellana	RHIRO17454		A0A2K6Q077
			E	Gorilla gorilla gorilla	GORGO29853		G3QDH1
			E	Homo sapiens	HUMAN70681		ARF4_HUMAN
			E	Pan paniscus	PANPA28123		A0A2R9BFR6
			E	Pan troglodytes	PANTR31407		A0A6D2Y181
			E	Nomascus leucogenys	NOMLE29977		A0A2I3H955
			E	Aotus nancymaae	AOTNA23218		A0A2K5F3A4

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