Pairwise Orthologs for CALMI38471

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Gene CALMI38471 (V9L834)

E Callorhinchus milii | Growth arrest-specific 1 [gas1]

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Evidence			Domains	Taxon	Protein ID	Relation type	Cross reference	Domain Architectures
Pair	HOG	OMA	Domains	Taxon	Protein ID	Relation type	Cross reference	Domain Architectures
			E	Scyliorhinus torazame	SCYTO09622		A0A401NST1
			E	Lepisosteus oculatus	LEPOC07355		W5NLZ1
			E	Sparus aurata	SPAAU33260		A0A671VE91
			E	Tetraodon nigroviridis	TETNG10751		H3D7F1
			E	Oryzias latipes	ORYLA02405		ENSORLG00000002967
			E	Kryptolebias marmoratus	KRYMA07843		A0A3Q2ZY12
			E	Poecilia reticulata	POERE04777		A0A3P9Q7W7
			E	Hippocampus comes	HIPCM09697		A0A3Q2YDW8
			E	Gadus morhua	GADMO50930		A0A8C4ZIF6
			E	Salmo salar	SALSA38759		ENSSSAG00000102309.1
			E	Astyanax mexicanus	ASTMX11265		ENSAMXG00000025638
			E	Ictalurus punctatus	ICTPU17244		W5U9Z5
			E	Cyprinus carpio carpio	CYPCA12700		A0A8C1H097
			E	Latimeria chalumnae	LATCH00261		H2ZTL1
			E	Procavia capensis	PROCA00961		ENSPCAG00000016864
			E	Pan paniscus	PANPA39761		A0A2R9C294
			E	Otolemur garnettii	OTOGA01456		H0XHW7
			E	Ailuropoda melanoleuca	AILME17070		D2H0Q3
			E	Ceratotherium simum simum	CERSS29523		XP_004440886
			E	Lacerta agilis	LACAG27591		XP_033020135
			E	Podarcis muralis	PODMU10596		A0A670JRJ6
			E	Varanus komodoensis	VARKO05822		A0A8D2JHY3
			E	Protobothrops mucrosquamatus	PROMU11466		XP_015674014
			E	Bufo bufo	BUFBU08954		XP_040272936
			E	Strongyloides ratti	STRRB01657		A0A090KPH6

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