Pairwise Orthologs for CALMI33491

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Gene CALMI33491 (A0A4W3HEL4)

E Callorhinchus milii | sphingomyelin phosphodiesterase [smpd3]

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Evidence			Domains	Taxon	Protein ID	Relation type	Cross reference	Domain Architectures
Pair	HOG	OMA	Domains	Taxon	Protein ID	Relation type	Cross reference	Domain Architectures
			E	Scyliorhinus torazame	SCYTO12874		A0A401NN88
			E	Chiloscyllium punctatum	CHIPU04838		A0A401S7T4
			E	Lepisosteus oculatus	LEPOC09138		W5M6U4
			E	Anguilla anguilla	ANGAN51391		XP_035252742
			E	Anabas testudineus	ANATE21586		ENSATEG00000007410.1
			E	Seriola dumerili	SERDU25560		A0A3B4V9P5
			E	Echeneis naucrates	ECHNA53951		A0A665V8T2
			E	Cynoglossus semilaevis	CYNSE25252		A0A3P8UMU3
			E	Scophthalmus maximus	SCOMX00191		A0A8D2ZKP0
			E	Dicentrarchus labrax	DICLA42953		A0A8C4ENL8
			E	Gasterosteus aculeatus	GASAC14999		G3NCC1
			E	Sparus aurata	SPAAU44587		A0A671WI72
			E	Mola mola	MOLML28094		A0A3Q4B6T5
			E	Takifugu rubripes	TAKRU51172		H2RN03
			E	Oryzias javanicus	ORYJA31284		A0A3S2N129
			E	Oryzias latipes	ORYLA20310		ENSORLG00000019155
			E	Oryzias melastigma	ORYME32714		A0A3B3C8S8
			E	Nothobranchius furzeri	NOTFU21721		A0A1A7ZUM3
			E	Kryptolebias marmoratus	KRYMA23128		A0A3Q3GBV1
			E	Cyprinodon variegatus	CYPVA05308		A0A3Q2DWQ6
			E	Gambusia affinis	GAMAF17411		ENSGAFG00000021943.1
			E	Poecilia formosa	POEFO09620		A0A087XGI4
			E	Poecilia reticulata	POERE28764		A0A3P9N363
			E	Xiphophorus maculatus	XIPMA24720		M4AN87
			E	Salarias fasciatus	SALFA29736		A0A672JE79

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