Pairwise Orthologs for CALMI31881

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Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Gene CALMI31881 (A0A4W3GGV8)

E Callorhinchus milii | dolichyl-phosphate-mannose--protein mannosyltransf [tmtc2]

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Evidence			Domains	Taxon	Protein ID	Relation type	Cross reference	Domain Architectures
Pair	HOG	OMA	Domains	Taxon	Protein ID	Relation type	Cross reference	Domain Architectures
			B	Candidatus Lindowbacteria bacterium RIFCSPLOWO2_12_FULL_62_27 none	UC16703222		A3G34_00805
			B	Nitrospirae bacterium NC_groundwater_1774_Pr3_B-0.1um_61_24	U04NT01392		HZA22_10960
			B	Planctomycetes bacterium B129_G9	U03PL00892		DRP79_04110
			E	Monosiga brevicollis	MONBE04710		A9V4P9
			E	Branchiostoma floridae	BRAFL40505		A0A9J7HQD6
			E	Eptatretus burgeri	EPTBU04689		A0A8C4NJF3
			E	Scyliorhinus torazame	SCYTO11894		A0A401P0Y9
			E	Chiloscyllium punctatum	CHIPU00845		A0A401RWD4
			E	Lepisosteus oculatus	LEPOC16679		W5NHQ2
			E	Anabas testudineus	ANATE21828		A0A7N6AYH6
			E	Seriola dumerili	SERDU20110		A0A3B4T4N4
			E	Echeneis naucrates	ECHNA52706		A0A665TL99
			E	Cynoglossus semilaevis	CYNSE25416		A0A3P8UXS0
			E	Scophthalmus maximus	SCOMX01246		ENSSMAG00000011220.1
			E	Gasterosteus aculeatus	GASAC15899		G3PK79
			E	Sparus aurata	SPAAU43002		A0A671U3Q1
			E	Mola mola	MOLML18623		A0A3Q3XH29
			E	Takifugu rubripes	TAKRU51942		A0A674NMC8
			E	Nothobranchius furzeri	NOTFU21850		A0A1A8A081
			E	Cyprinodon variegatus	CYPVA07149		A0A3Q2CZD7
			E	Gambusia affinis	GAMAF21612		ENSGAFG00000014583.1
			E	Poecilia formosa	POEFO06430		A0A087XW03
			E	Xiphophorus maculatus	XIPMA24105		M3ZTS1
			E	Astatotilapia calliptera	ASTCA38832		A0A3P8P4H3
			E	Neolamprologus brichardi	NEOBR15724		A0A3Q4HU80

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