Pairwise Orthologs for CALMI07136

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Gene CALMI07136 (K4FS07)

E Callorhinchus milii | Cytochrome c oxidase polypeptide VIc-2 [LOC103175179]

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Evidence			Domains	Taxon	Protein ID	Relation type	Cross reference	Domain Architectures
Pair	HOG	OMA	Domains	Taxon	Protein ID	Relation type	Cross reference	Domain Architectures
			E	Branchiostoma lanceolatum	BRALA01854		BL04396
			E	Eptatretus burgeri	EPTBU06099		A0A8C4NC40
			E	Scyliorhinus torazame	SCYTO18214		A0A401PWE9
			E	Lepisosteus oculatus	LEPOC06347		W5MLA7
			E	Anguilla anguilla	ANGAN44163		A0A0E9W7W7
			E	Anabas testudineus	ANATE04261		A0A3Q1HPK6
			E	Seriola dumerili	SERDU31213		A0A3B4U4V8
			E	Echeneis naucrates	ECHNA04116		A0A665U939
			E	Cynoglossus semilaevis	CYNSE04224		A0A3P8X103
			E	Scophthalmus maximus	SCOMX26682		A0A8D3B576
			E	Dicentrarchus labrax	DICLA24125		A0A8P4GF47
			E	Gasterosteus aculeatus	GASAC01698		G3N405
			E	Mola mola	MOLML27811		A0A3Q3X600
			E	Takifugu rubripes	TAKRU20151		H2RQY7
			E	Tetraodon nigroviridis	TETNG02766		H3C4Y2
			E	Oryzias javanicus	ORYJA01948		ENSOJAG00000002912.1
			E	Oryzias melastigma	ORYME34598		A0A3B3DHN5
			E	Nothobranchius furzeri	NOTFU16212		A0A8C6LCP8
			E	Kryptolebias marmoratus	KRYMA21222		A0A3Q3B9G9
			E	Cyprinodon variegatus	CYPVA26038		A0A3Q2DUV9
			E	Gambusia affinis	GAMAF00917		ENSGAFG00000014574.1
			E	Poecilia formosa	POEFO15996		A0A087YFB7
			E	Xiphophorus maculatus	XIPMA17857		M4AY51
			E	Salarias fasciatus	SALFA35765		A0A672FKA8
			E	Astatotilapia calliptera	ASTCA31694		A0A3P8Q4Y2

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