Pairwise Orthologs for CALJA39222

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Gene CALJA39222 (A0A5F4VSB5)

E Callithrix jacchus | Integrin beta [ITGB1]

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This entry is not the isoform used for orthologs inferences, orthologs below are inferred using the entry isoform CALJA39224.

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Evidence			Domains	Taxon	Protein ID	Relation type	Cross reference	Domain Architectures
Pair	HOG	OMA	Domains	Taxon	Protein ID	Relation type	Cross reference	Domain Architectures
			E	Branchiostoma floridae	BRAFL25492		A0A9J7LTZ5
			E	Scyliorhinus torazame	SCYTO09181		A0A401NK03
			E	Chiloscyllium punctatum	CHIPU05080		A0A401S8H2
			E	Callorhinchus milii	CALMI40001		A0A4W3ILN6
			E	Lepisosteus oculatus	LEPOC17788		W5LXV3
			E	Anguilla anguilla	ANGAN28475		XP_035285638
			E	Anabas testudineus	ANATE01840		A0A3Q1JMB5
			E	Seriola dumerili	SERDU16132		A0A3B4TH01
			E	Echeneis naucrates	ECHNA37821		A0A665UXR4
			E	Scophthalmus maximus	SCOMX18626		ENSSMAG00000002905.1
			E	Gasterosteus aculeatus	GASAC02531		G3NA85
			E	Sparus aurata	SPAAU48099		A0A671YSU5
			E	Mola mola	MOLML00266		A0A3Q3W659
			E	Oryzias javanicus	ORYJA25639		ENSOJAG00000016103.1
			E	Salarias fasciatus	SALFA03714		A0A672JHV0
			E	Astatotilapia calliptera	ASTCA40469		A0A3P8PIL5
			E	Haplochromis burtoni	HAPBU05257		ENSHBUG00000001530.1
			E	Neolamprologus brichardi	NEOBR24908		A0A3Q4HBP2
			E	Amphilophus citrinellus	AMPCI27658		A0A3Q0RNU7
			E	Amphiprion ocellaris	AMPOC00182		ENSAOCG00000016345.1
			E	Amphiprion percula	AMPPE20785		A0A3P8S5T9
			E	Hippocampus comes	HIPCM25447		A0A3Q2YLE6
			E	Salmo trutta	SALTR96250		A0A674A4N2
			E	Astyanax mexicanus	ASTMX02664		ENSAMXG00000019081
			E	Pygocentrus nattereri	PYGNA01418		A0A3B4BN45

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