Pairwise Orthologs for CALJA33885

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Gene CALJA33885 (F7GHR8)

E Callithrix jacchus | TNF superfamily member 13 [TNFSF13]

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Evidence			Domains	Taxon	Protein ID	Relation type	Cross reference	Domain Architectures
Pair	HOG	OMA	Domains	Taxon	Protein ID	Relation type	Cross reference	Domain Architectures
			E	Chiloscyllium punctatum	CHIPU19985		A0A401RU81
			E	Callorhinchus milii	CALMI02129		V9KYZ4
			E	Anguilla anguilla	ANGAN35086		XP_035287885
			E	Esox lucius	ESOLU21148		A0A6Q2YJ96
			E	Salmo salar	SALSA14753		ENSSSAG00000073630.2
			E	Cyprinus carpio carpio	CYPCA16901		A0A8C1FHD5
			E	Latimeria chalumnae	LATCH12827		H3ARE3
			E	Ornithorhynchus anatinus	ORNAN32696		A0A6I8NQV4
			E	Tachyglossus aculeatus	TACAU26987		XP_038624916
			E	Loxodonta africana	LOXAF07956		G3U2R8
			E	Echinops telfairi	ECHTE04783		ENSETEG00000006693
			E	Fukomys damarensis	FUKDA10276		ENSFDAG00000000662.1
			E	Heterocephalus glaber	HETGA02944		ENSHGLG00100017569.1
			E	Cavia aperea	CAVAP13437		ENSCAPG00000014570.1
			E	Cavia porcellus	CAVPO18288		A0A286Y0E3
			E	Chinchilla lanigera	CHILA16196		A0A8C2VDK4
			E	Octodon degus	OCTDE17064		ENSODEG00000017544.1
			E	Jaculus jaculus	JACJA21148		A0A8C5K4G9
			E	Cricetulus griseus	CRIGR03043		ENSCGRG00000011658.1
			E	Mus musculus	MOUSE05739		Q5F2A4
			E	Rattus norvegicus	RATNO01523		A0A8J8XC20
			E	Cercocebus atys	CERAT16947		A0A2K5NVG5
			E	Chlorocebus sabaeus	CHLSB05202		A0A0D9RGE7
			E	Macaca fascicularis	MACFA12903		ENSMFAG00000039025.1
			E	Macaca mulatta	MACMU13924		A0A1D5QCF7

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